Table 2. Mutants of seven Rho-GAP genes in the 12 tumor types in TCGA.
The mutants were identified from the TCGA mutation database in the GDC Data Portal. (A)All codon mutations for each gene. (B)Missense mutations for each gene. * Total = total mutations in DLC1–3 and the other 7 Rho-GAPs.
| TUMOR | AVG MU | ARHGAP35 (P190A) | ARHGAP5 (P190B) | ARHGAP6 | ARHGAP18 | ARHGAP21 | ARHGAP26 | ARHGAP28 | Total | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | ||
| UTERINE | 955 | 100 | 18.87 | 52 | 9.81 | 38 | 7.17 | 25 | 4.72 | 67 | 12.64 | 29 | 5.47 | 32 | 6.04 | 185 | 34.91 |
| MELANOMA | 495 | 19 | 4.07 | 19 | 4.07 | 21 | 4.5 | 11 | 2.36 | 28 | 6.00 | 21 | 4.50 | 15 | 3.21 | 133 | 28.48 |
| COLON | 425 | 23 | 5.76 | 23 | 5.76 | 12 | 3.01 | 9 | 2.26 | 27 | 6.77 | 7 | 1.75 | 20 | 5.01 | 99 | 24.81 |
| STOMACH | 330 | 19 | 4.35 | 28 | 6.41 | 12 | 2.75 | 5 | 1.14 | 10 | 2.29 | 6 | 1.37 | 13 | 2.97 | 101 | 23.11 |
| RECTUM | 312 | 4 | 2.92 | 5 | 3.65 | 2 | 1.46 | 3 | 2.19 | 8 | 5.84 | 4 | 2.92 | 2 | 1.46 | 21 | 15.33 |
| LUNG AD | 254 | 18 | 3.17 | 14 | 2.47 | 18 | 3.17 | 5 | 0.88 | 21 | 3.70 | 3 | 0.53 | 3 | 0.53 | 118 | 20.81 |
| LUNG SC | 250 | 29 | 5.89 | 12 | 2.44 | 11 | 2.24 | 5 | 1.02 | 15 | 3.05 | 3 | 0.61 | 6 | 1.22 | 123 | 25.00 |
| ESOPHAGUS | 133 | 4 | 2.17 | 5 | 2.72 | 1 | 0.54 | 0 | 0.00 | 7 | 3.80 | 1 | 0.54 | 7 | 3.8 | 32 | 17.39 |
| PANCREAS | 112 | 1 | 0.56 | 3 | 1.69 | 2 | 1.12 | 1 | 0.56 | 3 | 1.69 | 0 | 0.00 | 1 | 0.56 | 7 | 3.93 |
| LIVER | 94 | 6 | 1.65 | 4 | 1.10 | 2 | 0.55 | 1 | 0.27 | 1 | 0.27 | 2 | 0.55 | 0 | 0.00 | 24 | 6.59 |
| BREAST | 78 | 15 | 1.52 | 10 | 1.01 | 4 | 0.41 | 5 | 0.51 | 13 | 1.32 | 8 | 0.81 | 7 | 0.71 | 72 | 7.30 |
| PROSTATE | 40 | 2 | 0.40 | 4 | 0.81 | 1 | 0.20 | 1 | 0.20 | 4 | 0.81 | 1 | 0.20 | 1 | 0.20 | 14 | 2.83 |
| TUMOR | AVG MU | ARHGAP35 (P190A) | ARHGAP5 (P190B) | ARHGAP6 | ARHGAP18 | ARHGAP21 | ARHGAP26 | ARHGAP28 | Total | ||||||||
| MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | MU | PCT | ||
| UTERINE | 955 | 52 | 9.81 | 41 | 7.74 | 33 | 6.23 | 19 | 3.58 | 55 | 10.38 | 24 | 4.53 | 28 | 5.28 | 137 | 25.85 |
| MELANOMA | 495 | 16 | 3.43 | 19 | 4.07 | 21 | 4.50 | 10 | 2.14 | 24 | 5.14 | 21 | 4.50 | 14 | 3.00 | 123 | 26.34 |
| COLON | 425 | 19 | 4.76 | 10 | 2.51 | 10 | 2.51 | 6 | 1.50 | 20 | 5.01 | 4 | 1.00 | 15 | 3.76 | 79 | 19.8 |
| STOMACH | 330 | 14 | 3.2 | 9 | 2.06 | 9 | 2.06 | 2 | 0.46 | 8 | 1.83 | 4 | 0.92 | 11 | 2.52 | 79 | 18.08 |
| RECTUM | 312 | 4 | 2.92 | 3 | 2.19 | 2 | 1.46 | 3 | 2.19 | 7 | 5.11 | 4 | 2.92 | 2 | 1.46 | 18 | 13.14 |
| LUNG AD | 254 | 13 | 2.29 | 13 | 2.29 | 16 | 2.82 | 2 | 0.35 | 17 | 3.00 | 3 | 0.53 | 1 | 0.18 | 97 | 17.11 |
| LUNG SC | 250 | 18 | 3.66 | 7 | 1.42 | 8 | 1.63 | 4 | 0.81 | 13 | 2.64 | 3 | 0.61 | 6 | 1.22 | 100 | 20.33 |
| ESOPHAGUS | 133 | 3 | 1.63 | 5 | 2.72 | 1 | 0.54 | 0 | 0.00 | 6 | 3.26 | 1 | 0.54 | 6 | 3.26 | 30 | 16.30 |
| PANCREAS | 112 | 1 | 0.56 | 1 | 0.56 | 2 | 1.12 | 1 | 0.56 | 3 | 1.69 | 0 | 0.00 | 1 | 0.56 | 5 | 2.81 |
| LIVER | 94 | 5 | 1.37 | 3 | 0.82 | 2 | 0.55 | 1 | 0.27 | 1 | 0.27 | 0 | 0.00 | 0 | 0.00 | 19 | 5.22 |
| BREAST | 78 | 5 | 0.51 | 8 | 0.81 | 4 | 0.41 | 5 | 0.51 | 13 | 1.32 | 7 | 0.71 | 7 | 0.71 | 57 | 5.78 |
| PROSTATE | 40 | 1 | 0.20 | 4 | 0.81 | 1 | 0.20 | 1 | 0.20 | 3 | 0.61 | 1 | 0.20 | 0 | 0.00 | 12 | 2.42 |