Table 5. Fixed parameters with references justifying values used.
| Parameter | Description | Value | Justification |
|---|---|---|---|
| Number of histones | 60 | Berry et al., 2017a | |
| PRC2-mediated methylation rate (me0 to me1) (histone−1 s−1) | |||
| PRC2-mediated methylation rate (me1 to me2) (histone−1 s−1) | |||
| PRC2-mediated methylation rate (me2 to me3) (histone−1 s−1) | |||
| Noisy methylation rate (me2 to me3) (histone−1 s−1) |
|||
| Noisy methylation rate (me1 to me2) (histone−1 s−1) |
|||
| Noisy methylation rate (me0 to me1) (histone−1 s−1) |
|||
| Relative local PRC2-activity | 1 | ||
| Relative activation of PRC2 by H3K27me2 | 0.1 | ||
| Noisy demethylation rate (histone−1 s−1) |
|||
| Limit on maximum transcription initiation (s−1) | 1/60 | ||
| PT | Threshold for full repression of transcription | 1/3 | Hepworth et al., 2018; Jadhav et al., 2020 |
| Minimum transcription initiation rate (s−1) | Yang et al., 2014 | ||
| Maximum transcription initiation rate (s−1) | Yang et al., 2014; Ietswaart et al., 2017 | ||
| Demethylation probability (histone−1 transcription−1) | 0.17 | Figure 2—figure supplement 2 | |
| Histone exchange probability (histone−1 transcription−1) | |||
| Cell cycle length in warm (22°C) conditions (h) | 22 | Rahni and Birnbaum, 2019; Zhao et al., 2020 | |
| Cell cycle length in cold (5°C) conditions (h) | 154 |