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. 2021 Sep 2;10:e66454. doi: 10.7554/eLife.66454

Table 5. Fixed parameters with references justifying values used.

Parameter Description Value Justification
N Number of histones 60 Berry et al., 2017a
kme0-1 PRC2-mediated methylation rate (me0 to me1) (histone−1 s−1) 9kme
kme1-2 PRC2-mediated methylation rate (me1 to me2) (histone−1 s−1) 6kme
kme2-3 PRC2-mediated methylation rate (me2 to me3) (histone−1 s−1) kme
γme2-3 Noisy methylation rate (me2 to me3)
(histone−1 s−1)
kme2-3/20
γme1-2 Noisy methylation rate (me1 to me2)
(histone−1 s−1)
kme1-2/20
γme0-1 Noisy methylation rate (me0 to me1)
(histone−1 s−1)
kme0-1/20
β Relative local PRC2-activity 1
ρme2 Relative activation of PRC2 by H3K27me2 0.1
γdem Noisy demethylation rate
(histone−1 s−1)
fminpdem
flim Limit on maximum transcription initiation (s−1) 1/60
PT Threshold for full repression of transcription 1/3 Hepworth et al., 2018; Jadhav et al., 2020
fmin Minimum transcription initiation rate (s−1) fmax/25 Yang et al., 2014
fmax Maximum transcription initiation rate (s−1) 7.510-4 Yang et al., 2014; Ietswaart et al., 2017
pdem Demethylation probability (histone−1 transcription−1) 0.17 Figure 2—figure supplement 2
pex Histone exchange probability (histone−1 transcription−1) 8.310-2
cw Cell cycle length in warm (22°C) conditions (h) 22 Rahni and Birnbaum, 2019; Zhao et al., 2020
cc Cell cycle length in cold (5°C) conditions (h) 154