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. 2021 Sep 2;10:e66454. doi: 10.7554/eLife.66454

Table 6. Free parameters and their values used in the simulations.

Parameter Description Value
NNR Number of histones in nucleation region 6
Np Maximum number of proteins in assembly 17
Ngenx
Ngeny
Number of cell cycles in cold conditions
Number of cell cycles post cold
8.7
43.6
kme
kmehigh
kmelow
PRC2-mediated methylation rate (me2 to me3)
High rate (histone−1 s−1)
Low rate (histone−1 s−1)
41051.7105
kp-me Assembly-mediated methylation rate (histone−1 s−1) 0.01
γVIN3 Noisy addition of protein to the assembly (s−1) 1.810-4
w0 Timescale for VIN3 binding saturation in weeks 3
kbind Protein feedback rate (s−1) 0.05
γunbind Noisy unbinding of proteins from the assembly (protein−1 s−1) 10-3
v Number of proteins in assembly required for protein feedback 4
α = αw
α = αc
Trans-acting gene activation warm conditions
Trans-acting gene activation cold conditions
1
0.75