Table 6. Free parameters and their values used in the simulations.
| Parameter | Description | Value |
|---|---|---|
| Number of histones in nucleation region | 6 | |
| Maximum number of proteins in assembly | 17 | |
|
|
Number of cell cycles in cold conditions Number of cell cycles post cold |
8.7 43.6 |
|
|
PRC2-mediated methylation rate (me2 to me3) High rate (histone−1 s−1) Low rate (histone−1 s−1) |
|
| Assembly-mediated methylation rate (histone−1 s−1) | 0.01 | |
| Noisy addition of protein to the assembly (s−1) | ||
| Timescale for VIN3 binding saturation in weeks | 3 | |
| Protein feedback rate (s−1) | 0.05 | |
| Noisy unbinding of proteins from the assembly (protein−1 s−1) | 10-3 | |
| Number of proteins in assembly required for protein feedback | 4 | |
|
=
= |
Trans-acting gene activation warm conditions Trans-acting gene activation cold conditions |
1 0.75 |