Table 1.
Sample | Raw count | Cleaned count | Mapping % |
---|---|---|---|
Control 1 | 291,052,64 | 268,792,54 | 88.34 |
Control 2 | 113,657,819 | 102,102,063 | 87.89 |
Control 3 | 413,589,26 | 387,238,58 | 88.54 |
Challenged 1 | 915,321,41 | 872,570,38 | 90.42 |
Challenged 2 | 145,682,503 | 137,041,556 | 88.67 |
Challenged 3 | 140,667,468 | 125,491,032 | 90.23 |
The mapping percentage was calculated as the number of reads mapped to the reference genome divided by the number of cleaned count reads.