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. 1999 May;19(5):3457–3465. doi: 10.1128/mcb.19.5.3457

TABLE 1.

Pairs of oligonucleotide primers used in the nTRAP assay

Primer Sequencea
Size (nt)
Upstream Downstream
Modified TSb
 nTS-CTT 5′-AATCCGTCGAGCAGACTT-3′ -------Telomerase extension------→ 18
 nCX ←-----PCR amplification----- 3′-AATCCGTATCCGTATCCGTATCCG-5′ 24
Telomere addition site
 me8-TTA 5′-TTTGGTTATTTTATCTAAATTTTA-3′ 24
 TCP-23 3′-GAATCCGAATCCTTAAGCTATAG-5′ 23
Terminal telomeric permutations of nTS
 nTS-GCT 5′-AATCCGTCGAGCAGAGCT-3′ 18
 nTS-CTT 5′-AATCCGTCGAGCAGACTT-3′ 18
 nTS-TTA 5′-AATCCGTCGAGCAGATTA-3′ 18
 nTS-TAG 5′-AATCCGTCGAGCAGATAG-3′ 18
 TCP-CC 3′-CCGAATGCTCTGCTTAAGCTATAG-5′ 24
a

Upstream primers (i.e., telomerase substrate) are shown in the 5′-to-3′ orientation, and their 3′-terminal telomeric nucleotides are boldfaced. Downstream primers are shown in the 3′-to-5′ orientation, and those of their nucleotides that are complementary to the sequence synthesized by telomerase are boldfaced. The 3′-terminal bases of the upstream primers that may induce primer dimer formation with the downstream primers are underlined (see the text). 

b

TS, telomerase substrate.