Table 2.

List of common genes in different pathways

Pathways	Genes
PI3K-AKT	AKT3, TSC2, PTEN, mTOR, PIK3CA, RPTOR, TSC1, TCS2, RICOTR, PI3K3R2, PI3K3CB, INPP4B, STK11, PPP2R1A, PIK3R1, AKT2, RHEB, PDK1, AKT1
RAS/MAPK	KRAS, MAP2K1, NF1, NF2
Wnt/β-catenin	AXIN1, AXIN2, RNF43, WNT7B, WNT108, AMER1, CHD4, TCF7L2, WNT10A
Cell cycle	TP53, TERT, CTNNB1, ATM, APC, CDK4, CCND1, CCND3, CCND2, CDKN2A, RB1, CCNE1, CDK6, CDK8, CCKN2A/B, CDKN1B CDKN2B
DNA repair	ATR, ATM, BACA1, BRCA2, MLH1, MSH2, MSH6, FANCA, BRIP1, BAP1, CHEK2, ERCC2, FANCA/D2/E/L, MUTYH, NBN, PMS2, RAD50/51B, WRN
Transcriptome	IGF1R, RET, ERBB2, EGFR, KIT, PDGFRA, KDR, ERBB4, FLT4, PDGFRB, MET, FLT3, ERBB3
Growth factor receptors	MYC, SOX2, KDM6A, SMARCA4, RUNX1, MYCN, EZH2, NKX2, KMT2D, SMARCB1, DNMT3A, MYCL1, SOX10, ARID2, ASXL1, DNMT3A, EP300, KMT2C, KMT2D, NSD3, PBRM1, SMARCB1, SETD2, BAP1, IDH1, IDH2