Table 1.
QTLs controlling flowering time under different light quality environments and flower time sensitivity of a lentil interspecific recombinant inbred line population developed from L. culinaris cv. Lupa and L. orientalis BGE 016880
| QTL name | Trait name | LG | Position (cM) | Left CI − Right CI (cM)1 | Left marker1 | Right marker1 | LOD2 | PVE2 (%) | Add2 |
|---|---|---|---|---|---|---|---|---|---|
| qDTFH-1A | DTFH | 1 | 154 | 153.5–154.5 | Chr1_314467432 | Chr1_314826609 | 12.8 | 7.3 | 2.95 |
| qDTFH-1B | DTFH | 1 | 675 | 673.5–677.5 | Chr1_531417363 | Chr1_531478466 | 4.0 | 1.7 | 1.46 |
| qDTFH-3 | DTFH | 3 | 929 | 927.5–929.5 | Chr3_408832764 | Chr3_412274319 | 15.1 | 9.1 | 3.30 |
| qDTFH-5 | DTFH | 5 | 607 | 606.5–607.5 | Chr5_374745244 | Chr5_360592403 | 6.8 | 3.2 | 1.99 |
| qDTFH-6B | DTFH | 6 | 19 | 18.5–20.5 | Chr6_3105425 | Chr6_2116708 | 14.0 | 8.1 | 3.10 |
| qDTFH-6A | DTFH | 6 | 398 | 397.5–398.5 | Chr6_306050653 | Chr6_306189556 | 42.0 | 62.9 | −8.80 |
| qDTFL-1 | DTFL | 1 | 188 | 187.5–188.5 | Chr1_316264583 | Chr1_332134411 | 9.5 | 7.6 | 1.74 |
| qDTFL-6B | DTFL | 6 | 29 | 27.5–29.5 | Chr6_1026902 | Chr6_904559 | 12.6 | 10.9 | 2.09 |
| qDTFL-6C | DTFL | 6 | 260 | 259.5–261.5 | Chr6_68502582 | Chr6_201166536 | 15.1 | 14.5 | 2.40 |
| qDTFL-6A | DTFL | 6 | 407 | 406.5–407.5 | Chr6_301233901 | Chr6_294069348 | 27.5 | 45.7 | −4.29 |
| qFTS-2 | FTS | 2 | 913 | 912.5–913.5 | Chr2_311687210 | Chr2_311337314 | 4.8 | 7.9 | 0.02 |
| qFTS-3 | FTS | 3 | 888 | 886.5–888.5 | Chr3_402268033 | Chr3_404644546 | 4.3 | 7.2 | 0.02 |
| qFTS-6 | FTS | 6 | 396 | 394.5–396.5 | Chr6_310079803 | Chr6_306019917 | 21.4 | 59.7 | −0.05 |
DTFH, flowering time under high red/far-red light quality environment; DTFL, flowering time under low red/far-red light quality environment; FTS, flower time sensitivity towards different light quality environments.
1Left, right CI refers to the left and right positions of confidence interval with one-LOD drop from the QTL; Left, right markers refers to the markers at the left, right CI position (cM).
2LOD: logarithm of odds; PVE: percentage of phenotypic variance explained by the QTL; Add: additive effect of the QTL. A positive or negative additive effect indicates the effect is contributed by an allele from L. culinaris cv. Lupa or L. orientalis BGE 016880, respectively.