Table 2.
Flowering DEGs from the contrast set between low red/far-red ratio and high red/far-red ratio for both L. orientalis BGE016880 and L. culinaris cv. Lupa and possible related QTLs identified from a lentil interspecific RIL population developed from L. culinaris cv. Lupa and L. orientalis BGE 016880. A gene was significantly differentially expressed if it had an adjusted P-value < 0.05 and |Log2FC| ≥ 1.
| Gene name | Chr no. | L. orientalis BGE 016880 | L. culinaris cv. Lupa | Associated QTLs | ||||
|---|---|---|---|---|---|---|---|---|
| Adj.pval1 | Log2FC2 | Up.down | Adj.pval1 | Log2FC2 | Up.down | |||
| LcAGL6/13d | 1 | 1.12E-09 | 3.05 | Up-regulated | 4.06E-05 | 1.33 | Up-regulated | qDTFH-1A, qDTFL-1 |
| LcSPL3a | 2 | 4.86E-05 | −2.72 | Down-regulated | 2.16E-03 | −0.92 | Non-DEGs | |
| LcGA20oxC | 2 | 1.48E-07 | 3.40 | Up-regulated | 2.56E-03 | 1.41 | Up-regulated | |
| LcAGL6/13c | 2 | 2.20E-09 | 3.91 | Up-regulated | 1.05E-04 | 2.53 | Up-regulated | |
| LcGA3oxBC | 2 | 2.10E-04 | −1.95 | Down-regulated | 3.11E-02 | −0.69 | Non-DEGs | |
| LcELF4a | 3 | 6.27E-04 | 1.84 | Up-regulated | 5.55E-07 | 2.93 | Up-regulated | |
| PRR response regulator | 3 | 3.74E-07 | 0.92 | Non-DEGs | 1.28E-10 | 1.53 | Up-regulated | |
| LcGA20oxG | 3 | 3.97E-07 | 3.58 | Up-regulated | 4.57E-09 | 4.39 | Up-regulated | |
| LcTEMa | 5 | 1.37E-02 | 1.73 | Up-regulated | 1.80E-03 | 1.83 | Up-regulated | |
| LcSVPb | 5 | 1.42E-07 | −1.65 | Down-regulated | 3.01E-10 | −1.38 | Down-regulated | |
| LcFTb1/LcFTb2 | 6 | 3.76E-12 | 2.65 | Up-regulated | 2.48E-07 | 4.39 | Up-regulated | qDTFH-6B, qDTFL-6B |
| LcFTa1 | 6 | 4.66E-03 | 1.62 | Up-regulated | 4.96E-04 | 0.23 | Non-DEGs | qDTFH-6A, qDTFL-6A, qFTS-6 |
| LcPIF6 | 6 | 6.97E-13 | 2.12 | Up-regulated | 2.04E-08 | 2.04 | Up-regulated | |
| LcSOC1b | 7 | 3.89E-10 | 1.99 | Up-regulated | 1.28E-05 | 1.09 | Up-regulated | |
| LcTOC1a | 7 | 4.86E-05 | 1.02 | Up-regulated | 8.62E-11 | 1.19 | Up-regulated | |
| LcFULb | 7 | 1.24E-12 | 1.99 | Up-regulated | 1.60E-14 | 2.29 | Up-regulated |
1Adj.pval: FDR-adjusted P-value. P-values of multiple testing were adjusted with the Benjamini–Hochberg (BH) procedure to correct false discovery rate (FDR) (Benjamini and Hochberg, 1995).
2Log2FC: the log2 fold change of gene abundance based on contrast groups.