Table 3.
Family sequencing for genotype of the WRAP53 gene.
Level | Evidence | Ref | Alt | ExonicFunc | dbsnp | Exon | hgvs.c | hgvs.p | Patient | Father | Mother |
---|---|---|---|---|---|---|---|---|---|---|---|
Benign | ba1 bp6 bp4 | C | G | Non-synonymous SNV | rs2287499 | Exon1 | c.202C>G | p.R68G | Het | Het | Hom |
Benign | ba1 bp6 bp7 | C | T | Synonymous SNV | rs2287498 | Exon2 | c.450C>T | p.F150F | Het | Het | Hom |
Benign | pm1 ba1 bp6 bp4 | C | G | Non-synonymous SNV | rs7640 | Exon10 | c.1565C>G | p.A522G | Het | Het | Hom |
Likely pathogenic | pvs1 pm2 | TCTC | – | Frameshift deletion | – | Exon1 | c.224_227del | p.L75Pfs*14 | Het | – | Het |
Likely pathogenic | pvs1 pm2 | G | – | Frameshift deletion | rs1085307105 | Exon10 | c.1564del | p.A522Rfs*26 | Het | Het | – |
dbsnp |
1,000g2015
aug_all |
1,000g2015
aug_eas |
BerryAF | ExAC_ALL | ExAC_EAS |
gnomAD_exome
_ALL |
gnomAD_exome_
AFpopmax |
gnomAD_
exome_EAS |
|||
rs2287499 | 0.406749 | 0.2996 | 0.266271 | 0.212 | 0.294595 | 0.199237 | 0.773168 | 0.309216 | |||
rs2287498 | 0.222244 | 0.2996 | 0.213251 | 0.133 | 0.293566 | 0.130306 | 0.308395 | 0.308395 | |||
rs7640 | 0.511182 | 0.4077 | 0.187613 | 0.313 | 0.412544 | 0.299461 | 0.824941 | 0.420597 | |||
0.000163114 | . | ||||||||||
rs1085307105 | 0.0001483 | 0.00119956 | . |