Table 2.
Data preprocessing statistics and quality control.
| Samples | Raw PE(#) | Effective Tags(#) | AvgLen (nt) | GC (%) | Effective (%) |
|---|---|---|---|---|---|
| C1 | 85,018 | 61,984 | 253 | 53.41 | 72.91 |
| C2 | 102,349 | 65,723 | 253 | 52.72 | 64.21 |
| C3 | 111,288 | 69,731 | 253 | 53.28 | 62.66 |
| EC1 | 107,430 | 65,886 | 253 | 52.77 | 61.33 |
| EC2 | 87,497 | 65,608 | 253 | 56.69 | 74.98 |
| EC3 | 100,112 | 69,698 | 253 | 52.87 | 69.62 |
| H1 | 91,106 | 65,097 | 253 | 53.47 | 71.45 |
| H2 | 100,561 | 66,046 | 253 | 52.6 | 65.68 |
| H3 | 98,677 | 62,482 | 253 | 52.22 | 63.32 |
Note: Raw PE refers to the original PE reads; effective tags refer to the tag sequences that are finally used for subsequent analysis after filtering the chimera; avglen refers to the average length of effective tags; GC (%) refers to the content of GC bases in effective tags; effective (%) refers to the percentage of the number of effective tags and raw PE.