Table 2.
The quality assessment for all the assembled genomes examined in this study.
| Assembly | # Contigs (≥0 bp) | # Contigs (≥1,000 bp) | Total length (≥0 bp) | Total length (≥1,000 bp) | # Contigs | Largest contig | Total length | GC (%) | N50 | N75 | L50 | L75 | # N's per 100 kbp |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SAL03382 | 179 | 34 | 5,101,129 | 5,069,248 | 43 | 1,459,447 | 5,075,471 | 51.89 | 549,762 | 206,787 | 3 | 8 | 13.5 |
| SAL03381 | 174 | 32 | 5,122,141 | 5,093,922 | 42 | 1,129,176 | 5,100,360 | 51.91 | 427,932 | 185,546 | 4 | 10 | 9.29 |
| SAL03380 | 170 | 21 | 5,045,692 | 5,012,793 | 29 | 1,459,263 | 5,017,756 | 51.88 | 554,412 | 226,286 | 3 | 6 | 9.33 |
| SAL03379 | 81 | 21 | 4,731,474 | 4,719,477 | 22 | 1,549,532 | 4,720,231 | 52.1 | 478,743 | 305,471 | 3 | 6 | 8.37 |
| SAL03378 | 102 | 24 | 4,781,062 | 4,762,535 | 25 | 1,550,631 | 4,763,192 | 52.08 | 478,625 | 229,238 | 3 | 6 | 10.18 |
| SAL03377 | 162 | 22 | 4,753,471 | 4,718,123 | 25 | 1,550,267 | 4,719,884 | 52.1 | 479,674 | 229,550 | 3 | 6 | 10.17 |
| SAL03376 | 235 | 22 | 4,804,954 | 4,750,264 | 24 | 1,550,631 | 4,751,718 | 52.09 | 478,743 | 228,572 | 3 | 6 | 6.06 |
| SAL03375 | 102 | 23 | 4,771,947 | 4,752,092 | 26 | 1,550,531 | 4,754,283 | 52.09 | 479,247 | 183,592 | 3 | 7 | 8.58 |
| SAL03374 | 83 | 22 | 4,758,006 | 4,743,809 | 24 | 1,550,333 | 4,745,119 | 52.08 | 479,038 | 305,478 | 3 | 6 | 7.99 |
| SAL03373 | 1,408 | 20 | 5,158,260 | 4,716,945 | 100 | 1,550,272 | 4,765,377 | 51.97 | 478,743 | 305,792 | 3 | 6 | 6.55 |
| SAL03372 | 99 | 22 | 4,712,220 | 4,693,180 | 25 | 1,550,242 | 4,695,440 | 52.14 | 478,743 | 229,451 | 3 | 6 | 12.35 |
| SAL03371 | 246 | 49 | 4,869,844 | 4,820,555 | 59 | 491,585 | 4,827,171 | 51.91 | 163,089 | 118,349 | 10 | 19 | 3.94 |
| SAL03370 | 466 | 218 | 5,625,106 | 5,553,117 | 260 | 404,605 | 5,583,093 | 51.42 | 96,096 | 53,751 | 17 | 35 | 16.44 |
| SAL03369 | 197 | 30 | 5,126,187 | 5094110 | 37 | 1,280,533 | 5,099,320 | 51.91 | 427,931 | 185,546 | 4 | 9 | 5.65 |
| SAL03368 | 174 | 28 | 5,024,981 | 4,995,172 | 38 | 1,431,046 | 5,001,610 | 51.95 | 427,931 | 217,607 | 4 | 8 | 7.82 |
| SAL03367 | 161 | 29 | 5,210,710 | 5,184,301 | 38 | 1,431,045 | 5,190,098 | 51.84 | 427,931 | 217,607 | 4 | 8 | 5.51 |
| SAL03366 | 81 | 22 | 4,706,754 | 4,692,495 | 24 | 1,550,142 | 4,693,910 | 52.13 | 479,247 | 228,503 | 3 | 6 | 8.37 |
| SAL03365 | 85 | 21 | 4,706,547 | 4,691,715 | 23 | 1,551,525 | 4,693,016 | 52.14 | 478,531 | 305,799 | 3 | 6 | 6.16 |
| SAL03364 | 106 | 21 | 4,712,417 | 4,690,024 | 28 | 1,550,340 | 4,694,627 | 52.14 | 478,743 | 305,799 | 3 | 6 | 4.11 |
| SAL03363 | 79 | 22 | 4,705,365 | 4,691,095 | 26 | 1,550,240 | 4,694,110 | 52.14 | 478,531 | 305,799 | 3 | 6 | 8.35 |
| SAL03362 | 89 | 20 | 4,711,773 | 4,695,761 | 22 | 1,549,498 | 4,697,071 | 52.14 | 479,247 | 227,733 | 3 | 6 | 6.22 |
| SAL03361 | 157 | 20 | 4,728,930 | 4,694,640 | 22 | 1,549,402 | 4,696,094 | 52.14 | 489,575 | 227,891 | 3 | 6 | 10.18 |
| SAL03360 | 107 | 22 | 4,713,218 | 4,692,254 | 24 | 1,550,142 | 4,693,708 | 52.14 | 479,037 | 217,535 | 3 | 6 | 6.24 |
| SAL03359 | 171 | 36 | 5,213,277 | 5,186,643 | 46 | 824,144 | 5,193,128 | 51.84 | 427,931 | 178,887 | 5 | 11 | 1.85 |
| SAL03358 | 159 | 27 | 5,021,552 | 4,995,614 | 35 | 1,430,953 | 5,000,796 | 51.95 | 512,610 | 227,901 | 3 | 7 | 3.8 |
| SAL03357 | 350 | 30 | 5,069,148 | 4,991,023 | 44 | 1,280,532 | 4,999,671 | 51.95 | 330,177 | 185,546 | 4 | 10 | 3.84 |
| SAL03356 | 180 | 30 | 5,219,669 | 5187,707 | 39 | 1,431,046 | 5,193,505 | 51.84 | 427,931 | 238,251 | 4 | 7 | 7.41 |
| SAL03355 | 208 | 43 | 5,162,509 | 5,128,258 | 55 | 750,697 | 5,136,573 | 51.92 | 427,931 | 191,899 | 5 | 9 | 5.72 |
| SAL03354 | 199 | 44 | 5,159,850 | 5,129,202 | 54 | 750,567 | 5,136,673 | 51.92 | 513,033 | 191,899 | 4 | 9 | 5.68 |
| SAL03353 | 202 | 43 | 5,160,755 | 5,128,194 | 54 | 1,330,835 | 5,136,006 | 51.92 | 330,277 | 191,899 | 4 | 9 | 5.67 |
| SAL03352 | 199 | 45 | 5,159,795 | 5,127,779 | 56 | 726,995 | 5,135,592 | 51.92 | 330,177 | 238,251 | 6 | 10 | 5.57 |
| SAL03351 | 191 | 43 | 4,922,045 | 4,889,897 | 52 | 678,126 | 4,895,060 | 52.17 | 212,889 | 164,537 | 7 | 14 | 11.83 |
| SAL03350 | 193 | 43 | 4,921,119 | 4,889,386 | 52 | 772,058 | 4,894,893 | 52.18 | 212,621 | 164,419 | 7 | 13 | 9.81 |
| SAL03349 | 192 | 42 | 4,921,306 | 4,888,841 | 51 | 772,055 | 4,894,424 | 52.17 | 212,621 | 165,335 | 7 | 13 | 11.99 |
| SAL03348 | 182 | 48 | 4,853,874 | 4,822,278 | 58 | 491,585 | 4,828,987 | 51.91 | 163,089 | 118,349 | 9 | 18 | 8.03 |
| SAL03347 | 2340 | 310 | 7,989,568 | 7,7107,85 | 353 | 319,335 | 7,740,624 | 46.41 | 56,757 | 27,806 | 42 | 90 | 91.9 |
| SAL03346 | 135 | 26 | 4,612,643 | 4,590,676 | 31 | 551,545 | 4,593,945 | 52.28 | 418,729 | 200,975 | 5 | 9 | 8.47 |
| SAL03345 | 152 | 27 | 4,618,512 | 4,593,259 | 31 | 696,184 | 4,595,721 | 52.28 | 389,815 | 314,628 | 5 | 8 | 4.29 |
| SAL03344 | 128 | 28 | 4,615,565 | 4,595,105 | 33 | 695,786 | 4,598,374 | 52.29 | 389,013 | 300,606 | 5 | 8 | 10.61 |
| SAL03343 | 144 | 29 | 4,614,770 | 4,591,004 | 34 | 509,159 | 4,594,273 | 52.29 | 373,423 | 200,975 | 6 | 10 | 6.38 |
| SAL03342 | 143 | 29 | 4,614,296 | 4,591,142 | 34 | 533,428 | 4,594,411 | 52.29 | 368,293 | 241,262 | 6 | 9 | 8.36 |
| SAL03341 | 159 | 31 | 4,655,576 | 4,630,294 | 35 | 533,423 | 4,632,756 | 52.25 | 368,294 | 200,975 | 6 | 10 | 10.43 |
| SAL03340 | 167 | 30 | 4,615,758 | 4,585,694 | 36 | 501,135 | 4,589,337 | 52.28 | 368,230 | 241,262 | 6 | 9 | 10.55 |
| SAL03339 | 134 | 25 | 4,608,711 | 4,586,707 | 30 | 551,545 | 4,589,873 | 52.29 | 390,375 | 314,629 | 5 | 8 | 8.32 |
| SAL03338 | 149 | 35 | 4,677,138 | 4,654,275 | 40 | 542,400 | 4,657,409 | 52.16 | 419,125 | 352,009 | 5 | 8 | 8.35 |
| Average | 240.44 | 40.2 | 4,955,324.98 | 4,911,586.4 | 49.7556 | 1,089,199.1 | 4,917,882 | 51.92 | 398,064.3 | 219,999.6 | 5.56 | 10.96 | 9.783 |