Table 1.
Important web links shared during the CAiSMD workshop
| Speaker (lecture) | Group website (web link to tools presented) | References |
|---|---|---|
| Ludger A. Wessjohann (KL01) | Research group: http://www.ipb-halle.de/en/research/bioorganic-chemistry/ | |
| Email: wessjohann@ipb-halle.de | Tools: Databases and Tools, e.g. for computational mass spectrometry (https://www.ipb-halle.de/en/infrastructure/databases-and-tools/?MP=6-1058) | [48–50] |
| Marnix Medema (KL02) | Research group: http://marnixmedema.nl/ | |
| Email: marnix.medema@wur.nl | Tools: the antiSMASH software (https://antismash.secondarymetabolites.org); the antiSMASH database (https://antismash-db.secondarymetabolites.org/); Paired Omics Data Platform (https://pairedomicsdata.bioinformatics.nl); the plantiSMASH software (http://plantismash.secondarymetabolites.org/) | [13–15, 51, 52] |
| Tilmann Weber (KL03) | Research group: https://www.biosustain.dtu.dk/ | |
| Email: tiwe@biosustain.dtu.dk | Tools: the antiSMASH software (https://antismash.secondarymetabolites.org); the antiSMASH database (https://antismash-db.secondarymetabolites.org/); CRISPy (https://crispy.secondarymetabolites.org); the secondary metabolite bioinformatics portal (http://www.secondarymetabolites.org/) | [14, 15, 52, 53] |
| ÖzlemTastan Bishop (KL04) | Research group: https://rubi.ru.ac.za/ | |
| Email: o.tastanbishop@ru.ac.za | Tools: SANCDB compound database (https://sancdb.rubi.ru.ac.za/) | [35, 54] |
| Justin J. J. van der Hooft (HS01) | Research group: https://www.wur.nl/en/Persons/Justin-dr.-JJJ-Justin-van-der-Hooft.htm | |
| Email: justin.vanderhooft@wur.nl | Tools: GNPS (https://gnps.ucsd.edu/ProteoSAFe/static/gnps-splash.jsp); MS2LDA (http://www.ms2lda.org); MAGMa (https://www.emetabolomics.org/); Paired Omics Data Platform (https://pairedomicsdata.bioinformatics.nl) | [34, 51, 52, 55, 56] |
| Daniel M Shadrack (HS02) | Research group: | |
| Email: dmssjut@gmail.com | Tools: none | |
| Thommas Musyoka (HS02) | Research group: same as KL04 | |
| Email: mutemibiochemistry@gmail.com | Tools: same as KL04 | |
| Fidele Ntie-Kang (HS02) | Research group: https://ntiekfidele.jimdofree.com/ | |
| Email: fidele.ntie-kang@ubuea.cm | Tools: ANPDB compound database (http://african-compounds.org/anpdb/) | [36, 37] |
| Yannick Djoumbou-Feunang (HS03) | Research group: | |
| Email: yannick.djoumboufeunang@corteva.com | Tools: BioTransformer (http://biotransformer.ca/) | [26] |
| Conrad Stork (HS04) | Research group: https://www.zbh.uni-hamburg.de/personen/acm/cstork.html | |
| Email: stork@zbh.uni-hamburg.de | Tools: NERDD web server (https://nerdd.univie.ac.at/); FAME3 (https://nerdd.univie.ac.at/fame3/); GLORY (https://nerdd.univie.ac.at/glory/); GLORYx (https://nerdd.univie.ac.at/gloryx/); Hit Dexter 2.0 (https://nerdd.univie.ac.at/hitdexter/); NP-Scout (https://nerdd.univie.ac.at/npscout/); Skin Doctor CP (https://nerdd.univie.ac.at/skinDoctorII/) | [17–23] |
| Neann Mathai (HS04) | Research group: https://www.uib.no/en/persons/Neann.Sarah.Mathai | |
| Email: neann.mathai@uib.no | Tools: Same as above | |
| Maria Sorokina (HS05) | Research group: https://cheminf.uni-jena.de/members/maria-sorokina/ | |
| Email: maria.sorokina@uni-jena.de | Tools: CDK (https://cdk.github.io/); COCONUT compound database (https://coconut.naturalproducts.net); NP-likeness score web application (https://naples.naturalproducts.net/); Sugar Removal Utility (https://sugar.naturalproducts.net/) | [38–43] |
| Kiran K. Telukunta (OP01) | Research group: | |
| Email: kiran.telukunta@indiayouth.info | Tools: galaxy tutorials (https://galaxyproject.org/learn/) | [57] |
| Paul F. Zierep (OP02) | Research group: http://www.pharmbioinf.uni-freiburg.de/main/members/ziereppaul/ | |
| Email: paul.zierep@gmail.com | Tools: sempi 2.0 web server (http://sempi.pharmazie.uni-freiburg.de/); StreptomeDB compound database (http://thymin.pharmazie.uni-freiburg.de/streptomedb/); the ANPDB compound database (http://african-compounds.org/anpdb/) | [22, 36, 37, 58] |
| Victor C. Osamor (OP03) | Research group: https://covenantuniversity.edu.ng/Profiles/Osamor-Victor-Chukwudi#.YGYag1UzbIU | |
| Email: victor.osamor@covenantuniversity.edu.ng; vcosamor@gmail.com | Tools: OsamorSoft (not available) | [23] |
| Marilia Valli (OP04) | Research group: https://nubbe.iq.unesp.br/portal/index.html | |
| Email: mariliava@gmail.com | Tools: NuBBE database (https://nubbe.iq.unesp.br/portal/nubbe-search.html) | [59, 60] |
| Vanderlan da Silva Bolzani (OP04) | Research group: same as above | |
| Email: vanderlan.bolzani@unesp.br | Tools: same as above | |
| Samuel Egieyeh (OP05) | Research group: | |
| Email: segieyeh@uwc.ac.za | Tools: none | |
| Miquel Duran-Frigola (OP06) | Research group: https://ersilia.io/ | |
| Email: miquel@ersilia.io | Tools: Chemical Checker (https://pypi.org/project/chemicalchecker/) | [61] |
| Yannick Djoumbou-Feunang (OP07) | Research group: same as HS03 | |
| Email: yannick.djoumboufeunang@corteva.com | Tools: same as HS03 | |
| Ana L. Chávez-Hernández (OP08) | Research group: https://www.difacquim.com/ | |
| Email: anachavez3026@gmail.com | Tools: Epigenetic Target Profiler web server (http://www.epigenetictargetprofiler.com); BIOFACQUIM natural products database and other tools, e.g. Platform for Unified Molecular Analysis (PUMA), Activity Landscape Plotter, etc. (https://www.difacquim.com/d-tools/) | [62, 63] |
| José L. Medina-Franco (OP08) | Research group: same as above | |
| Email: jose.medina.franco@gmail.com | Tools: same as above | |
| Johannes Kirchmair (OP09) | Research group: https://comp3d.univie.ac.at/the-comp3d-team/johannes-kirchmair/ | |
| Email: johannes.kirchmair@univie.ac.at | Tools: same as HS04 | |
| Maria Sorokina (OP10) | Research group: same as HS05 | |
| Email: maria.sorokina@uni-jena.de | Tools: same as HS05 | |
| Vaishali M. Patil (OP11) | Research group: | |
| Email: vaishuwise@gmail.com | Tools: none | |
| Romuald Tematio Fouedjou (OP12) | Research group: | |
| Email: tematioromy@yahoo.fr | Tools: none |