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. 2021 Sep 6;20:173. doi: 10.1186/s12934-021-01658-4

Table 1.

Top twenty highest expressed genes in Levilactobacillus brevis Lbr-6108 (top) and Lbr-35 (bottom) comparing T18 to T6 in MRS with 10,000 μg/mL monosodium glutamate

Genes Lbr-6108 Lbr-35
log2 fold change Adjusted p-value Reads base mean log2 fold change Adjusted p-value Reads base mean
Uronate isomerase (EC 5.3.1.12) 4.90 4.71E−139 10,468 2.29 4.39E−29 1311
NrdR-regulated deoxyribonucleotide transporter, PnuC-like 4.67 5.67E−148 2208 3.22 6.92E−51 1278
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) 4.41 1.19E−258 79,074 2.86 1.08E−108 52,006
Glucuronide transporter UidB 4.31 5.52E−112 5426 1.56 1.54E−19 477
beta-glucuronidase (EC 3.2.1.31) 4.30 2.64E−165 2277 1.69 2.55E−16 491
Alpha-glucosidase (EC 3.2.1.20) 4.10 4.32E−152 7925 1.72 1.95E−25 1533
Galactokinase (EC 2.7.1.6) 4.01 1.11E−47 1609 1.05 5.53E−06 299
Lactose and galactose permease, GPH translocator family 3.99 2.62E−55 1442 0.39 5.80E−02 362
hypothetical protein 3.97 6.30E−32 152 0.95 1.90E−03 65
Tyrosyl-tRNA synthetase (EC 6.1.1.1) 3.86 1.31E−243 10,243 0.58 9.50E−07 2184
Carbamate kinase (EC 2.7.2.2) 3.86 7.94E−201 7896 1.70 1.30E−23 1,713
Probable glutamate/gamma-aminobutyrate antiporter 3.79 2.11E−164 20,971 − 0.12 5.07E−01 2237
Glutamate decarboxylase GadA (EC 4.1.1.15) 3.74 7.24E−173 26,711 0.17 2.39E−01 2969
Phosphopentomutase (EC 5.4.2.7) 3.64 2.41E−66 6719 − 0.72 4.59E−04 2996
Ornithine carbamoyltransferase (EC 2.1.3.3) 3.64 2.41E−106 26,481 0.83 4.99E−08 9679
Arginine/ornithine antiporter ArcD 3.64 2.05E−113 5413 0.77 3.52E−10 1437
Glutamyl-tRNA synthetase (EC 6.1.1.17) @ Glutamyl-tRNA(Gln) synthetase (EC 6.1.1.24) 3.59 3.90E−152 39,673 0.04 8.67E−01 4886
Phage lysin, glycosyl hydrolase, family 25 3.57 2.01E−17 1011 5.13 2.13E−18 1903
hypothetical protein 3.49 1.36E−161 1036
Purine nucleoside phosphorylase (EC 2.4.2.1) 3.48 9.00E−58 3140 − 0.43 5.93E−02 2133
Aggregation promoting factor 2.80 7.03E−15 37,746 5.84 1.04E−25 22,462
Phage lysin, glycosyl hydrolase, family 25 3.57 2.01E−17 1011 5.13 2.13E−18 1903
lipoprotein precursor (putative) 3.16 7.83E−54 990 4.08 3.75E−79 1987
NLP/P60 family protein 1.40 7.51E−14 1243 3.85 4.25E−45 5309
NrdR-regulated deoxyribonucleotide transporter, PnuC-like 4.67 5.67E−148 2208 3.22 6.92E−51 1278
Phage lysin, glycosyl hydrolase, family 25 2.90 3.22E−122 22,673 2.88 3.06E−47 12,481
Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily 2.20 2.22E−44 7114 2.87 2.95E−47 8280
Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) 4.41 1.19E−258 79,074 2.86 1.08E−108 52,006
peptidoglycan lytic protein P45 2.32 5.18E−79 4020 2.85 2.14E−86 3066
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) 3.10 1.75E−67 57,256 2.80 2.80E−138 50,915
Streptococcal hemagglutinin protein 2.60 8.15E−24 2848 2.72 5.81E−22 3186
Bifunctional autolysin Atl/N-acetylmuramoyl-l-alanine amidase (EC 3.5.1.28)/ endo-beta-N-acetylglucosaminidase (EC 3.2.1.96) 1.64 1.61E−22 11,980 2.69 1.48E−38 10,461
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) 2.52 2.47E−108 55,842 2.64 5.47E−118 46,441
Aggregation promoting factor 0.50 5.01E−03 684 2.60 4.12E−20 698
Aggregation promoting factor 0.72 3.32E−03 1607 2.59 2.95E−24 890
tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE 2.45 5.57E−70 3144 2.56 8.51E−48 3573
DNA topoisomerase IV subunit A (EC 5.99.1.3) 1.39 8.11E−56 5955 2.49 6.22E−90 13,461
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP +] (EC 1.2.1.79) 2.73 5.84E−131 4798 2.37 2.51E−66 4039
tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG 2.63 1.75E−52 4279 2.36 3.10E−31 5697
Uronate isomerase (EC 5.3.1.12) 4.90 4.71E−139 10,468 2.29 4.39E−29 1311