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gramtools joint SNP and deletion genotyping performance compared to other genome graph tools. For each of the 45 deletion regions in each of the 17 validation samples, we made a sequence containing each tool’s calls, giving a total of 765 data points per tool (gramtools, vg, graphtyper). The curves show the cumulative frequency of edit distances between these sequences and truth assemblies. Baseline refers to using the M. tuberculosis H37Rv standard reference sequence only
