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[Preprint]. 2021 Aug 31:2021.08.30.458287. [Version 1] doi: 10.1101/2021.08.30.458287

TABLE 1.

Sequences of hairpin oligonucleotides for E-beacons and ssDNA oligonucleotides used for evaluating E-beacon function.

Name Sequence
Eb.1–3 [S]-CGCTC CCAAAAAAAAAAACC GAGCG-[Q]
EB.1 Target: GGTTTTTTTTTTTGG
Random: CTGGTCTTCGGGCTA
G1: GGTTTTGTTTTTTGG
G2: GGTTTTGGTTTTTGG
G3: GGTTTTGGGTTTTGG
G2F: GGGTTTTTTTTTGGG
C3: GGTTTTCCCTTTTGG
Eb.19(WT) [S]-CGCTC TGGTGTTGAAGGTTT GAGCG-[Q]
E484 Target (3’) ACCACAACTTCCAAA (5’)
Eb.19(E484K) [S]-CGCTC TGGTGTTAAAGGTTT GAGCG-[Q]
E484K Target (3’) ACCACAATTTCCAAA (5’)
E484Q Target (3’) ACCACAAGTTCCAAA (5’)

Red =mismatch; Bold = codon 484 of SARS-CoV2–2 spike protein; [S] sterol; [Q] quencher