TABLE 1.
Sequences of hairpin oligonucleotides for E-beacons and ssDNA oligonucleotides used for evaluating E-beacon function.
| Name | Sequence |
|---|---|
| Eb.1–3 | [S]-CGCTC CCAAAAAAAAAAACC GAGCG-[Q] |
| EB.1 Target: | GGTTTTTTTTTTTGG |
| Random: | CTGGTCTTCGGGCTA |
| G1: | GGTTTTGTTTTTTGG |
| G2: | GGTTTTGGTTTTTGG |
| G3: | GGTTTTGGGTTTTGG |
| G2F: | GGGTTTTTTTTTGGG |
| C3: | GGTTTTCCCTTTTGG |
| Eb.19(WT) | [S]-CGCTC TGGTGTTGAAGGTTT GAGCG-[Q] |
| E484 Target | (3’) ACCACAACTTCCAAA (5’) |
| Eb.19(E484K) | [S]-CGCTC TGGTGTTAAAGGTTT GAGCG-[Q] |
| E484K Target | (3’) ACCACAATTTCCAAA (5’) |
| E484Q Target | (3’) ACCACAAGTTCCAAA (5’) |
Red =mismatch; Bold = codon 484 of SARS-CoV2–2 spike protein; [S] sterol; [Q] quencher