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. 2023 Jan 4;102(1):4–13. doi: 10.1038/s41374-021-00663-w

Table 2.

Sequences of RT-PCR primers and probes approved by CDCs in different countries.

Country Target gene Primer and probe Sequence (5′-3′) Position (Reference sequence: NC_045512.2)
China12 ORF1ab ORF1ab-F ccctgtgggttttacacttaa 13,342–13,362
ORF1ab-R acgattgtgcatcagctga 13,442–13,460
ORF1ab-P FAM-ccgtctgcggtatgtggaaaggttatgg-BHQ1 13,377–13,404
N N-F ggggaacttctcctgctagaat 28,881–28,902
N-R cagacattttgctctcaagctg 28,958–28,979
N-P FAM-ttgctgctgcttgacagatt-TAMRA 28,934–28,953
USA13 N N1-F gaccccaaaatcagcgaaat 28,287–28,306
N1-R tctggttactgccagttgaatctg 28,335–28,358
N1-P FAM-accccgcattacgtttggtggacc-BHQ1 28,309–28,332
N N2-F ttacaaacattggccgcaaa 29,164–29,183
N2-R gcgcgacattccgaagaa 29,213–29,230
N2-P FAM-acaattttgcccccagcgcttcag-BHQ1 29,188–29,210
N N3-F gggagccttgaatacaccaaaa 28,681–28,702
N3-R tgtagcacgattgcagcattg 28,732–28,752
N3-P FAM-aycacattggcacccgcaatcctg-BHQ1 28,706–28,727
Japan14 N N-F aaattttggggaccaggaac 29,125–29,144
N-R tggcagctgtgtaggtcaac 29,280–29,299
N-P FAM-atgtcgcgcattggcatgga-BHQ 29,222–29,241
Germany11 RdRP RdRp-F gtgaratggtcatgtgtggcgg 15,431–15,452
RdRP-R caratgttaaasacactattagcata 15,505–15,530
RdRp-P FAM-caggtggaacctcatcaggagatgc-BBQ 15,470–15,494
E E-F acaggtacgttaatagttaatagcgt 26,269–26,294
E-R atattgcagcagtacgcacaca 26,360–26,381
E-P FAM-acactagccatccttactgcgcttcg-BBQ 26,332–26,357

E envelope protein, F forward primer, N nucleocapsid protein, ORF open reading frame, P probe, R reverse primer, RdRp RNA-dependent RNA polymerase.