Table 3.

List of genes associated with the significant SNPs

GGA	Location (Mb)	Gene name
1a	54.68–54.76	CHST11IN, TXNRD1IN, IGF11Mb
1b	134,493,403	C2orf493UR, FHL2DS, TGFBRAP11Mb
1c	184,458,596	MTMR2IN
1d	193,808,533	STIM1IN, DGAT21Mb
2a	103,154,441	IMPACTCL, HRH4CL
2b	110.94–111.28	PLAG1SYN, IMPAD1DS
3	16,964,703	FBXO28SYN
4a	44,839,695	FGF51Mb, BMP31Mb
4b	49,798,002	SLC4A4DS, GC1Mb
4c	52,734,745	SPATA51Mb, ADAD11Mb, TRPC31Mb
4d	59.55–63.00	METAP1IN, PPP3CAIN, ASAH13UR, FGF201Mb
4e	65.67–66.31	SPATA18DS, SGCBDS, DCUN1D4IN, CWH43IN, OCIAD1IN, SLAIN2IN, TECIN, NFXL1IN, CORININ
8a	22,999,302	EPS15IN
8b	27,225,215	LEPROT3UR, JAK11Mb, LEPR1Mb
8c	28,197,569	NEGR1CL
10	1,870,252	PPCDCIN
11	16,452,035	CRISPLD2CL, HNF4betaCL
12	1,843,370	MAPKAPK3IN
13a	16.31–16.48	KIF3AUS, SEPT8IN, CCNI2IN, AFF4IN
13b	16.71–16.87	ARHGAP26IN, NR3C1IN, NDF1P11Mb, FGF11Mb,
14a	13.14–13.94	STUB1US, RHBDL1IN, JMJD8DS, SPSB3IN, NUBP2US, HN1LDS, IGFALS1Mb
14b	14.50–15.06	PDIA2IN, C16orf62IN, DNAH3IN, ZP2MS
15	11.61–12.34	MED13LIN, TBX5IN
19	8,618,001	SYNRGIN, TBX21Mb, HNF1B1Mb
27	4.11–4.96	RPL19US, CACNB1US, DNAJC7IN, ATP6V0A1IN, STAT31Mb, STATB51Mb

GGA = Gallus gallus autosome chromosome; Location = the chromosome region spanned by the significant SNPs (in base pairs); Gene name = names of associated genes; IN = intron variant; SYN = synonymous variant; DS = downstream gene variant; US = upstream gene variant; 3US = 3ʹ untranslated region; MS = missense variant; CL = closest gene (in the case of absence of genes within 5 kb from the top SNP); 1 Mb = important genes located within a 1-Mb range from the top SNP, as determined by the literature