Table 2.
List of genes present of complete chloroplast genomes 12 subg. Amygdalus species
| Category of Genes | Group of Gene | Name of Gene | Name of Gene | Name of Gene | Name of Gene | Name of Gene |
|---|---|---|---|---|---|---|
| Self-replication | Ribosomal RNA genes | rrn4.5(× 2) | rrn5(× 2) | rrn16(× 2) | rrn23(× 2) | |
| Transfer RNA genes | trnA-UGC*,(× 2) | trnC-GCA | trnD-GUC | trnE-UUC | trnF-GAA | |
| trnfM-CAU | trnG-GCC* | trnG-UCC | trnH-GUG | trnI-CAU(×2) | ||
| trnI-GAU*,(× 2) | trnK-UUU* | trnL-CAA(× 2) | trnL-UAA* | trnL-UAG | ||
| trnM-CAU | trnN-GUU(× 2) | trnP-UGG | trnQ-UUG | trnR-ACG(×2) | ||
| trnR-UCU | trnS-GCU | trnS-GGA | trnS-UGA | trnT-GGU | ||
| trnT-UGU | trnV-GAC(× 2) | trnV-UAC* | trnW-CCA | trnY-GUA | ||
| Small subunit of ribosome | rps2 | rps3 | rps4(a,b,d,h,l) | rps7(×2) | rps8 | |
| rps11 | rps12**,(×2) | rps14 | rps15 | rps16* | ||
| rps18 | rps191) | |||||
| Large subunit of ribosome | rpl2*,(×2) | rpl14 | rpl16* | rpl20 | rpl22 | |
| rpl23(×2) | rpl32 | rpl33 | rpl36 | |||
| DNA-dependent RNA polymerase | rpoA | rpoB | rpoC1* | rpoC2 | ||
| Genes for photosynthesis | Subunits of NADH-dehydrogenase | ndhA* | ndhB*,(×2) | ndhC | ndhD | ndhE |
| ndhF | ndhG | ndhH | ndhI | ndhJ | ||
| ndhK | ||||||
| Subunits of photosystem I | psaA | psaB | psaC | psaI | psaJ | |
| Subunits of photosystem II | psbA | psbB | psbC | psbD | psbE | |
| psbF | psbH | psbI | psbJ | psbK | ||
| psbL | psbM | psbN | psbT | psbZ | ||
| Subunits of cytochrome b/f complex | petA | petB* | petD* | petG | petL | |
| petN | ||||||
| Subunits of ATP synthase | atp A | atp B | atp E | atp F* | atp H | |
| atpI | ||||||
| Subunits of rubisco | rbcL | |||||
| Other genes | Maturase | matK | ||||
| Protease | clpP** | |||||
| Envelope membrane protein | cemA | |||||
| Subunit of acetyl-CoA carboxylase | accD | |||||
| C-type cytochrome synthesis gene | ccsA | |||||
| Genes of unknown function | Conserved open reading frames | ycf1(×2) | ycf2(×2) | ycf3**(c) | ycf4 | ycf15(×2)(e,f,g,i,j,k) |
1) genes are two in P. davidiana var. potaninii Rehd., P. kansuensis, P. persica, P. dulcis, P. davidiana and P. mongolica and only one in P. ferganensis, P. mira, P. tenella, P. pedunculata, P. tangutica, P. triloba; a that does not have this gene in P. ferganensis; b that does not have this gene in P. mira; d that does not have this gene in P. tangutica; e that does not have this gene in P. davidiana var. potaninii Rehd.; f that does not have this gene in P. kansuensis; g that does not have this gene in P. persica; h that does not have this gene in p. pedunculata; i that does not have this gene in P. dulcis; j that does not have this gene in P. davidiana; k that does not have this gene in P. mongolica; l that does not have this gene in P. triloba; * Gene contains one intron; ** gene contains two introns; (× 2) indicates that the number of the repeat unit is 2