Table 1.
Database | Gene/protein | Disease | Node | Interaction | Selection/filter |
---|---|---|---|---|---|
HuRIa | 8327 | – | 8327 | 19 082 | HuRI |
GTRDb | 8275 | – | 8275 | 52 569 | Promotor (−1000, +1000); more than 8 binding sites per gene |
Reactome | 5219 | – | 5219 | 29 328 | – |
String | 13 444 | – | 13 444 | 91 019 | Experimentally confirmed with score ≥350 |
DisGeNET | 7635 | 8431 | 16 066 | 67 993 | DGA score ≥0.3 |
Mimminer | – | 2646 | 2646 | 9840 | Similarity score >0.6 |
Gene network | 18 718 | – | 18 718 | 183 457 | – |
Disease–gene network | 19 463 | 10 103 | 29 566 | 261 298 | – |
aHuRI—Human Reference Interatome
bGTRD—Gene Transcription Regulation Database