Table 3.
Metrics of seed genes in PGI network
| Vertex | Degree centrality | Eigenvector centrality | Betweenness centrality | Closeness centrality | Clustering coefficient |
|---|---|---|---|---|---|
| TREX1 | 2.03E-03 | 1.67E-03 | 1.91E-04 | 3.17E-01 | 3.84E-02 |
| COL4A1 | 5.88E-04 | 5.08E-04 | 2.82E-05 | 2.79E-01 | 9.09E-02 |
| COL4A2 | 5.88E-04 | 7.54E-05 | 1.22E-05 | 2.64E-01 | 1.64E-01 |
| PITX2 | 2.24E-03 | 5.46E-03 | 1.27E-04 | 3.41E-01 | 1.16E-01 |
| FOXC1 | 6.95E-04 | 3.59E-03 | 1.26E-05 | 3.25E-01 | 2.18E-01 |
| NOTCH3 | 1.98E-03 | 2.43E-03 | 8.82E-05 | 3.17E-01 | 1.07E-01 |
| HTRA1 | 2.67E-04 | 2.18E-04 | 1.14E-05 | 2.70E-01 | 0.00E+00 |
| ADA2 | 5.34E-05 | 1.03E-03 | 0.00E+00 | 2.91E-01 | 0.00E+00 |
| CTSA | 3.42E-03 | 2.57E-03 | 1.04E-03 | 3.27E-01 | 2.28E-02 |
| COLGALT1 | 5.34E-04 | 3.07E-03 | 4.29E-05 | 3.25E-01 | 1.78E-01 |
| Seed median | 6.41E-04 | 2.05E-03 | 3.56E-05 | 3.17E-01 | 9.88E-02 |
| Seed mean | 1.24E-03 | 2.06E-03 | 1.55E-04 | 3.06E-01 | 9.34E-02 |
| Graph median | 3.74E-04 | 1.17E-03 | 7.99E-06 | 3.06E-01 | 8.67E-02 |
| Graph mean | 1.05E-03 | 2.84E-03 | 1.27E-04 | 2.99E-01 | 1.83E-01 |