Table 4.
Performance of algorithms in LOOCV
| LOOCV rank | Rank | |||||||
|---|---|---|---|---|---|---|---|---|
| RWR | N2V | DIAMOnD | GenePanda | RWRH | N2VH | IDLP | Degree centrality | |
| TREX1 | 3006 | 3907 | naa | 5408 | 1429 | 4539 | 18 103 | 2643.5 |
| COL4A1 | 29 | 20 | 2344 | 22 | 21 | 19 | 18 201 | 7505.5 |
| COL4A2 | 30 | 20 | 177 | 5 | 31 | 21 | 16 574 | 7505.5 |
| PITX2 | 523 | 2035 | na | 4698 | 78 | 131 | 236 | 2326 |
| FOXC1 | 1515 | 2157 | na | 3652 | 54 | 126 | 15 323 | 6792.5 |
| NOTCH3 | 1198 | 4710 | na | 10 439 | 76 | 816 | 18 925 | 2727 |
| HTRA1 | 8731 | 1871 | 269 | 14 636 | 293 | 825 | 949 | 11 076.5 |
| ADA2 | 15 307.5 | 10 750 | na | 9380.5 | 18 206 | 15 555 | 10 011 | 17 226 |
| CTSA | 1037 | 3951 | na | 4418 | 993 | 3427 | 17 603 | 1255 |
| COLGALT1 | 3302 | 2173 | 1960 | 4393 | 6197 | 4632 | 10 016 | 7923 |
| Median | 1356.5 | 2165 | na | 4558 | 185.5 | 820.5 | 15 948.5 | 7149 |
| Mean | 3467.85 | 3159.4 | na | 5705.15 | 2737.8 | 3009.1 | 12 594.1 | 6698.0 |
aThe DIAMOnD algorithm is a stepwise prioritization algorithm. The maximum steps were set to 5000, so that LOOCV rank of some seed genes is not available (na).