Antibodies |
|
Ultra-LEAF™ Purified anti-human CD3 (clone UCHT1) |
BioLegend |
Cat#300465 |
Ultra-LEAF™ Purified anti-human CD28 (clone CD28.2) |
BioLegend |
Cat#302934 |
Ultra-LEAF™ Purified Mouse IgG1, κ Isotype Ctrl (clone MG1-45) |
BioLegend |
Cat#401407 |
APC/Cyanine7 anti-human CD3 (clone HIT3A) |
BioLegend |
Cat#300318 |
Alexa Fluor® 700 anti-human CD4 (clone RPA-T4) |
BioLegend |
Cat#300526 |
PE/Cyanine7 anti-human CD8a (clone RPA-T8) |
BioLegend |
Cat#301012 |
Brilliant Violet 605™ anti-human CD45RA (clone HI100) |
BioLegend |
Cat#304134 |
Alexa Fluor® 488 anti-human CD197 (CCR7) (clone G043H7) |
BioLegend |
Cat#353206 |
PE/Dazzle™ 594 anti-human CD197 (CCR7) (clone G043H7) |
BioLegend |
Cat#353236 |
PerCP/Cyanine5.5 anti-human CD19 (clone HIB19) |
BioLegend |
Cat#302230 |
|
Biological Samples |
|
Whole blood of healthy donors |
New York Blood Center |
N/A |
|
Chemicals, Peptides, and Recombinant Proteins |
|
Recombinant Human B7-H1 (PD-L1, CD274)-Fc Chimera (carrier-free) |
BioLegend |
Cat#762506 |
Recombinant Human PD-L2 (B7-DC, CD273)-Fc Chimera (carrier-free) |
BioLegend |
Cat#772508 |
Staphylococcus Enterotoxin E (SEE) |
Toxin Technology |
Cat#ET404 |
Lymphoprep density gradient |
STEMCELL Technologies |
Cat#07851 |
RosetteSep™ Human T Cell Enrichment Cocktail |
STEMCELL Technologies |
Cat#15061 |
CFSE Cell Division Tracker Kit |
BioLegend |
Cat#423801 |
CellTrace™ Far Red Cell Proliferation Kit |
Thermo Fisher Scientific |
Cat#C34572
|
Zombie UV™ Fixable Viability Kit |
BioLegend |
Cat#423108 |
CD8 MicroBeads, human |
Miltenyi Biotec |
Cat#130-045-201 |
Naive CD4+ T Cell Isolation Kit II, human |
Miltenyi Biotec |
Cat#130-094-131 |
Memory CD4+ T Cell Isolation Kit, human |
Miltenyi Biotec |
Cat#130-091-893 |
|
Deposited Data |
|
bulk RNAseq data |
This manuscript |
GEO: GSE174860
|
Single-cell RNAseq data |
https://doi.org/10.1016/j.cell.2018.10.038 |
GEO: GSE120575
|
|
Experimental Models: Cell Lines |
|
Raji (ATCC® CCL-86™) |
ATCC |
ATCC® CCL-86™ |
|
Recombinant DNA |
|
pHR-PD-L1-mCherry |
Hui et al.Science. 2017 Mar 31; 355(6332):1428-1433 |
N/A |
pHR-PD-L2-mCherry |
Philips et al.J Biol Chem. 2020 Apr 3; 295(14): 4372–4380 |
N/A |
pHR-control |
This manuscript |
N/A |
|
Software and Algorithms |
|
bulk RNAseq data analysis |
https://app.basepairtech.com/ |
N/A |
Gene ontology enrichment analysis |
http://www.pantherdb.org |
N/A |
Transcription factor enrichment analysis |
https://maayanlab.cloud/chea3 |
N/A |
Single cell RNAseq analysis |
https://bioturing.com |
N/A |
Survival analysis |
kmplot.com |
N/A |
Gene expression associations in TCGA |
http://timer.cistrome.org |
N/A |
GraphPad Prism 9 |
https://www.graphpad.com |
N/A |
FlowJo 10.1r7 |
https://www.flowjo.com |
N/A |