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. 2021 Aug 24;24(9):103020. doi: 10.1016/j.isci.2021.103020
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Ultra-LEAF™ Purified anti-human CD3 (clone UCHT1) BioLegend Cat#300465
Ultra-LEAF™ Purified anti-human CD28 (clone CD28.2) BioLegend Cat#302934
Ultra-LEAF™ Purified Mouse IgG1, κ Isotype Ctrl (clone MG1-45) BioLegend Cat#401407
APC/Cyanine7 anti-human CD3 (clone HIT3A) BioLegend Cat#300318
Alexa Fluor® 700 anti-human CD4 (clone RPA-T4) BioLegend Cat#300526
PE/Cyanine7 anti-human CD8a (clone RPA-T8) BioLegend Cat#301012
Brilliant Violet 605™ anti-human CD45RA (clone HI100) BioLegend Cat#304134
Alexa Fluor® 488 anti-human CD197 (CCR7) (clone G043H7) BioLegend Cat#353206
PE/Dazzle™ 594 anti-human CD197 (CCR7) (clone G043H7) BioLegend Cat#353236
PerCP/Cyanine5.5 anti-human CD19 (clone HIB19) BioLegend Cat#302230

Biological Samples

Whole blood of healthy donors New York Blood Center N/A

Chemicals, Peptides, and Recombinant Proteins

Recombinant Human B7-H1 (PD-L1, CD274)-Fc Chimera (carrier-free) BioLegend Cat#762506
Recombinant Human PD-L2 (B7-DC, CD273)-Fc Chimera (carrier-free) BioLegend Cat#772508
Staphylococcus Enterotoxin E (SEE) Toxin Technology Cat#ET404
Lymphoprep density gradient STEMCELL Technologies Cat#07851
RosetteSep™ Human T Cell Enrichment Cocktail STEMCELL Technologies Cat#15061
CFSE Cell Division Tracker Kit BioLegend Cat#423801
CellTrace™ Far Red Cell Proliferation Kit Thermo Fisher Scientific Cat#C34572
Zombie UV™ Fixable Viability Kit BioLegend Cat#423108
CD8 MicroBeads, human Miltenyi Biotec Cat#130-045-201
Naive CD4+ T Cell Isolation Kit II, human Miltenyi Biotec Cat#130-094-131
Memory CD4+ T Cell Isolation Kit, human Miltenyi Biotec Cat#130-091-893

Deposited Data

bulk RNAseq data This manuscript GEO: GSE174860
Single-cell RNAseq data https://doi.org/10.1016/j.cell.2018.10.038 GEO: GSE120575

Experimental Models: Cell Lines

Raji (ATCC® CCL-86™) ATCC ATCC® CCL-86™

Recombinant DNA

pHR-PD-L1-mCherry Hui et al.Science. 2017 Mar 31; 355(6332):1428-1433 N/A
pHR-PD-L2-mCherry Philips et al.J Biol Chem. 2020 Apr 3; 295(14): 4372–4380 N/A
pHR-control This manuscript N/A

Software and Algorithms

bulk RNAseq data analysis https://app.basepairtech.com/ N/A
Gene ontology enrichment analysis http://www.pantherdb.org N/A
Transcription factor enrichment analysis https://maayanlab.cloud/chea3 N/A
Single cell RNAseq analysis https://bioturing.com N/A
Survival analysis kmplot.com N/A
Gene expression associations in TCGA http://timer.cistrome.org N/A
GraphPad Prism 9 https://www.graphpad.com N/A
FlowJo 10.1r7 https://www.flowjo.com N/A