Table 4a.
Rate of regions containing insertion sites in genes and neuron genes in hg38
| 1, Dataset features: cells, transposon / transposase sources | 2, No of different ISCR* | 3, No & % of different ISCR overlapping a gene*** | 4, No of genes overlapped by ISCR** | 5, No & % of different ISCR overlapping a neuron gene*** | 6, No & % of neuron genes among genes overlapped by ISCR** | 7, p**** |
|---|---|---|---|---|---|---|
| HeLa, Ifp2 / PB | 7,623 | 5,060 (66.4%) | 4,663 | 2,231 (29.2%) | 1,587 (34.0%) | 2.1 × 10−82 |
| HeLa, Ifp2/PB.NLS-1–558 | 516 | 327 (63.2%) | 376 | 123 (23.8%) | 123 (37.6%) | 2.5 × 10−6 |
| HeLa, Ifp2 / Mm523 | 1,479 | 863 (58.4%) | 956 | 321 (21.7%) | 303 (31.7 %) | 3.1 × 10−11 |
| G401, Ifp2 / Hs524 | 1052 | 665 (63.2%) | 740 | 279 (26.5%) | 258 (38.8%) | 1.3 × 10−14 |
| HEK293, Ifp2/PB [22] | 21,967 | 15,226 (69.3%) | 9,370 | 7,173 (32.6%) | 3,032 (32.4%) | 1.9 × 10−150 |
| HCT116, Ifp2/PB [14] | 172,866 | 113,648 (67.7%) | 23,578 | 49,688 (28.8%) | 5,945 (25.3%) | 1.3 × 10−88 |
| CD4+, Ifp2 / PB [25] | 8,954 | 6,940 (77.5%) | 5,763 | 3,134 (35.0%) | 1,903 (33.0%) | 6.2 × 10−89 |
| HCT116, sleeping beauty/SB [14] | 28,490 | 17,534 (61.54%) | 10,460 | 7,776 (27.3%) | 3,229 (30.9%) | 2.5 × 10−128 |
| CD4+, sleeping beauty /SB [25] | 8,290 | 5,441 (64,63%) | 5,133 | 2,406 (29.0%) | 1,750 (34.1%) | 2.9 × 10−93 |
| HCT116, TcBuster/ TCBUSTER [14] | 17,227 | 11,841 (68.7%) | 8,522 | 5,517 (32.0%) | 2,820 (33.1%) | 4.9 × 10−151 |