Table 2.

The top SNPs for TD and survival.

Chr	SNP	Position		Type	Freq	Effect	SE	P	Fr. genvar	Fr. phenvar
		USDA_OmykA_1.1 (GCF_013265735.2)	Omyk_1.0 (GCF_002163495.1)
Time to death (DT)
16	AX-89969631	48210249	44822522	C/T	0.84	− 1.76	0.31	1.91e−08	17%	6%
16	AX-89973999	48231736	44846688	G/T	0.80	− 1.49	0.28	1.16e−07	14%	5%
11	AX-89976064	65121697	61934614	C/A	0.25	− 1.34	0.28	1.26e−06	14%	5%
11	AX-89919380	61196699	58124529	C/T	0.15	− 1.42	0.31	5.66e−06	10%	4%
25	AX-89933102	10230926	49243042	C/T	0.55	− 1.04	0.23	6.25e−06	11%	4%
16	AX-89924175	48220966	44834124	G/A	0.68	− 1.16	0.26	8.72e−06	12%	4%
25	AX-89956080	11916756	50865587	C/A	0.41	1.06	0.24	8.92e−06	11%	4%
16	AX-89926977	42909875	39677850	G/A	0.09	1.69	0.38	8.96e−06	9%	3%
11	AX-89965839	42857280	39901842	G/T	0.22	− 1.42	0.32	1.20e−05	14%	5%
16	AX-89934677	56176558	52680845	C/T	0.52	1.30	0.30	1.30e−05	17%	6%
11	AX-89942657	59019488	56061980	C/A	0.84	1.33	0.31	1.35e−05	10%	3%
11	AX-89963218	67994309	64707318	C/A	0.88	1.47	0.34	1.44e−05	9%	3%
16	AX-89919325	53039122	49570500	C/T	0.43	− 1.10	0.25	1.47e−05	12%	4%
25	AX-89957036	13953432	52861958	C/T	0.50	− 0.88	0.20	1.57e−05	8%	3%
Survival
16	AX-89969631	48210249	44822522	C/T	0.84	− 0.16	0.033	1.35e−06	20%	5%
16	AX-89924175	48220966	44834124	G/A	0.68	− 0.12	0.03	1.36e−05	19%	4%
16	AX-89973999	48231736	44846688	G/T	0.80	− 0.13	0.03	1.39e−05	16%	4%
16	AX-89976723	19107648	16278865	C/A	0.55	− 0.10	0.02	1.95e−05	14%	3%
4	AX-89965612	12013837	54733880	G/A	0.14	0.16	0.04	4.81e−05	19%	4%
15	AX-89918838	22601764	19112526	G/A	0.44	0.11	0.03	5.48e−05	18%	4%
11	AX-89976064	65121697	61934614	C/A	0.25	− 0.12	0.03	6.07e−05	16%	3%
16	AX-89964054	48349717	44952397	C/A	0.47	− 0.11	0.03	7.48e−05	18%	4%
16	AX-89955003	40411668	37206251	C/A	0.90	− 0.15	0.04	8.53e−05	14%	3%

The two last columns give the estimated fraction of genetic and phenotypic variance explained by each SNP. SNPs are listed based on significance.