Table 3.
Positional candidate genes within the 1000 Kb window (47,750 K–48,750 K) of the two most significant SNPs (AX-89969631 and AX-89973999) from the latest assembly of the rainbow trout genome USDA_OmykA_1.1 (GCF_013265735.2) in NCBI-Genbank.
| Gene ID | Description | Type | Location | Strand |
|---|---|---|---|---|
| LOC110492148 | Calmodulin-binding transcription activator 1 | Protein coding | 47409235–47908274 | − |
| LOC110492150 | dnaJ homolog subfamily C member 11 | Protein coding | 47918157–47927478 | − |
| thap3 | THAP domain containing, apoptosis associated protein 3 | Protein coding | 47918157–47927478 | − |
| LOC110492151 | F-box only protein 6 | Protein coding | 47932110–47950665 | + |
| LOC110492153 | Cell division control protein 42 homolog | PROTEIN coding | 47953418–47956955 | − |
| LOC118939548 | Uncharacterized | ncRNA | 47981859–47988731 | + |
| LOC110492154 | Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma | Protein coding | 48006228–48010038 | + |
| LOC118939547 | N-fatty-acyl-amino acid synthase/hydrolase PM20D1.2-like | Protein coding | 48010169–48026769 | + |
| LOC118939549 | Acidic mammalian chitinase-like | Protein coding | 48031902–48036060 | − |
| LOC118939550 | Neurofascin-like | Pseudo | 48042033–48074973 | − |
| LOC118939551 | Calcium-independent phospholipase A2-gamma-like | Protein coding | 48076504–48087589 | − |
| LOC110492156 | Uncharacterized protein At5g50100, chloroplastic | Protein coding | 48089427–48093940 | − |
| LOC110491082 | Monocarboxylate transporter 2-like | Protein coding | 48101686–48113512 | + |
| LOC110492157 | Chemokine-like protein TAFA-1 | Protein coding | 48145652–48171888 | + |
| LOC110491083 | chemokine-like protein TAFA-4 | Protein coding | 48184977–48196697 | − |
| LOC118939552 | Uncharacterized LOC118939552 | ncRNA | 48208293–48212220 | − |
| LOC110492159 | NEDD8-activating enzyme E1 catalytic subunit | Protein coding | 48220758–48230211 | − |
| LOC110492162 | PRA1 family protein 3 | Protein coding | 48231344–48235518 | + |
| LOC110492161 | Leiomodin-3 | Protein coding | 48234990–48241496 | − |
| LOC110492160 | FERM domain-containing protein 4B | Protein coding | 48242058–48272289 | − |
| LOC110492164 | Microphthalmia-associated transcription factor | Protein coding | 48282132–48331926 | + |
| LOC110492165 | 2-epi-5-epi-valiolone synthase | Protein coding | 48333920–48343017 | − |
| LOC110492167 | myoD family inhibitor domain-containing protein 2-like | Protein coding | 48343132–48347793 | − |
| LOC110492168 | forkhead box protein P1-B | Protein coding | 48348467–48371945 | − |
| LOC110492170 | Eukaryotic translation initiation factor 4E type 3 | Protein coding | 48372037–48383460 | − |
| LOC110492169 | Serine/threonine-protein phosphatase 4 regulatory subunit 2-A | Protein coding | 48383542–48393271 | + |
| LOC110491084 | Guanylyl cyclase-activating protein 2 | Protein coding | 48400096–48402355 | + |
| oard1 | O-acyl-ADP-ribose deacylase 1 | Protein coding | 48403279–48405646 | + |
| LOC110492174 | Synaptotagmin-2 | Protein coding | 48407064–48483333 | + |
| LOC110492173 | Protein phosphatase 1 regulatory subunit 12B | Protein coding | 48483470–48521507 | − |
| LOC110492176 | Neurofilament medium polypeptide | Protein coding | 48525042–48533176 | − |
| LOC110491085 | Immunoglobulin-like and fibronectin Type III domain-containing protein 1 | Protein coding | 48547180–48548167 | − |
| LOC110492177 | Metabotropic glutamate receptor 4 | Protein coding | 48650173–48970488 | − |
The genes highlighted in bold include the two most significant SNPs.