PCA	Principle component analysis
SVD	Singular value decomposition
LDA	Linear discriminant analysis
TCGA	The Cancer Genome Atlas
DE	Differential expression
LASSO	Least absolute shrinkage and selection operator
DTA	Dynamic threshold algorithm
PEEP	Patient-specific perturbation profile
5-CV	Five-fold cross-validation
SVM	Support vector machine
ROC	Receiver operating characteristic
AUC	Area under curve
LUSC	Lung squamous cell carcinoma
LIMMA	Linear models for microarray data
SNF	Similarity network fusion
BRCA	Breast invasive carcinoma
LUAD	Lung adeno-179 carcinoma
PRAD	Prostate adenocarcinoma
COAD	Colon adenocarcinoma
KICH	Kidney chromophobe
GBM	Glioblastoma multiforme
VAR	Maximum variance