Table 2.
Differentially expressed miRNAs.
| Names | Sequence (5’ – 3’) | TMM | TMM | logFC | p value | q value |
|---|---|---|---|---|---|---|
| Positive | Negative | |||||
| hsa-miR-339-5p | TCCCTGTCCTCCAGGAGCTCACG | 37.4 | 127.6 | -1.8 | < 0.0001 | 0.007 |
| hsa-miR-133a-3p | TTTGGTCCCCTTCAACCAGCTG | 6.1 | 28.4 | -2.0 | < 0.0001 | 0.008 |
| hsa-miR-326 | CCTCTGGGCCCTTCCTCCAG | 10.6 | 50.0 | -2.2 | < 0.0001 | 0.008 |
| hsa-miR-331-3p | GCCCCTGGGCCTATCCTAGAA | 0.9 | 10.3 | -2.8 | 0.0001 | 0.011 |
| hsa-miR-369-3p | AATAATACATGGTTGATCTTT | 7.9 | 26.0 | -1.7 | 0.0005 | 0.031 |
| hsa-miR-328-3p | CTGGCCCTCTCTGCCCTTCCGT | 134.1 | 350.9 | -1.4 | 0.0005 | 0.031 |
| hsa-miR-26a-1-3p | CCTATTCTTGGTTACTTGCACG | 2.1 | 10.9 | -2.5 | 0.0007 | 0.034 |
| hsa-miR-139-3p | TGGAGACGCGGCCCTGTTGGAGT | 30.2 | 79.8 | -1.4 | 0.0008 | 0.034 |
| hsa-miR-493-3p | TGAAGGTCTACTGTGTGCCAGG | 1.9 | 11.5 | -2.1 | 0.0010 | 0.034 |
| hsa-miR-664a-5p | ACTGGCTAGGGAAAATGATTGGAT | 49.7 | 108.1 | -1.1 | 0.0010 | 0.034 |
| hsa-miR-101-3p | TACAGTACTGTGATAACTGAA | 6070.1 | 3215.4 | 0.9 | 0.0011 | 0.034 |
| hsa-miR-146a-5p | TGAGAACTGAATTCCATGGGTT | 2960.5 | 6266.3 | -1.1 | 0.0012 | 0.034 |
| hsa-miR-144-3p | TACAGTATAGATGATGTACT | 511.3 | 295.1 | 0.8 | 0.0013 | 0.035 |
| hsa-miR-323b-3p | CCCAATACACGGTCGACCTCTT | 10.5 | 29.9 | -1.4 | 0.0016 | 0.040 |
| hsa-miR-1307-3p | ACTCGGCGTGGCGTCGGTCGTG | 150.3 | 337.4 | -1.2 | 0.0017 | 0.040 |
| hsa-miR-423-3p | AGCTCGGTCTGAGGCCCCTCAGT | 353.7 | 649.1 | -0.9 | 0.0023 | 0.050 |
| hsa-miR-376c-3p | AACATAGAGGAAATTCCACGT | 3.8 | 14.0 | -1.8 | 0.0028 | 0.056 |
| hsa-miR-1 | TGGAATGTAAAGAAGTATGTAT | 69.5 | 168.7 | -1.3 | 0.0037 | 0.071 |
| hsa-miR-1908-5p | CGGCGGGGACGGCGATTGGTC | 23.1 | 59.1 | -1.3 | 0.0042 | 0.073 |
| hsa-miR-744-5p | TGCGGGGCTAGGGCTAACAGCA | 138.5 | 298.1 | -1.1 | 0.0042 | 0.073 |
| hsa-miR-584-5p | TTATGGTTTGCCTGGGACTGAG | 419.9 | 835.4 | -1.0 | 0.0048 | 0.078 |
| hsa-miR-6721-5p | TGGGCAGGGGCTTATTGTAGGAG | 2.4 | 9.3 | -1.9 | 0.0055 | 0.083 |
| hsa-miR-432-5p | TCTTGGAGTAGGTCATTGGGTGG | 130.1 | 432.4 | -1.7 | 0.0055 | 0.083 |
| hsa-miR-28-3p | CACTAGATTGTGAGCTCCTGGA | 72.1 | 150.4 | -1.0 | 0.0058 | 0.084 |
| hsa-miR-29b-3p | TAGCACCATTTGAAATCAGTGTT | 292 | 154 | 0.93 | 0.0068 | 0.094 |
| Macrometastasis | Negative | |||||
| hsa-miR-339-5p | TCCCTGTCCTCCAGGAGCTCACG | 38.9 | 138.0 | -1.8 | 0.0001 | 0.041 |
| Micrometastasis | Negative | |||||
| hsa-miR-376c-3p | AACATAGAGGAAATTCCACGT | 1.5 | 13.7 | -3.1 | 0.0001 | 0.046 |
| hsa-miR-326 | CCTCTGGGCCCTTCCTCCAG | 9.8 | 49.2 | -2.3 | 0.0003 | 0.049 |
| hsa-miR-323b-3p | CCCAATACACGGTCGACCTCTT | 7.1 | 29.5 | -2.0 | 0.0004 | 0.049 |
| Macrometastasis | Micrometastasis | |||||
| hsa-miR-122-5p | TGGAGTGTGACAATGGTGTTTG | 8948.2 | 76103.3 | -3.1 | 0.0002 | 0.062 |
| hsa-miR-125b-2-3p | TCACAAGTCAGGCTCTTGGGAC | 0.3 | 8.9 | -3.6 | 0.0006 | 0.090 |
Data shows the 25 most significant differentially expressed miRNAs according to the metastatic status of patients. The list includes the average trimmed mean of M-values (TMM) values, logarithmic fold change (logFC), raw p values and Benjamini-Hochberg FDR corrected q values.