| Deposited data |
|
| scRNA-seq for COVID-19 PBMC |
Arunachalam et al., 2020 |
GSE155673 |
| scRNA-seq for COVID-19 PBMC |
Guo
et al., 2020 |
GSE150861 |
| scRNA-seq for COVID-19 PBMC |
Lee
et al., 2020 |
GSE149689 |
| scRNA-seq for COVID-19 PBMC |
Schulte-Schrepping et al.,
2020 |
EGAS00001004571 |
| scRNA-seq for COVID-19 PBMC |
Wilk
et al., 2020 |
GSE150728 |
| scRNA-seq for COVID-19 BAL |
Liao
et al., 2020 |
GSE145926 |
| scRNA-seq for COVID-19 BAL |
Grant et al., 2021 |
GSE155249 |
| scRNA-seq for COVID-19 Lung Biopsy |
Bharat et al., 2020 |
GSE158127 |
| scRNA-seq for Sepsis PBMC |
Reyes et al., 2020 |
SCP548, SCP550
|
| scRNA-seq for Multiple-Sclerosis PBMC |
Schafflick et al., 2020 |
GSE138266 |
| Integrated COVID-19 scRNA-seq data |
This paper |
Mendeley Data: https://doi.org/10.17632/vrxdg7mm6x.1
|
| Integrated COVID-19 scRNA-seq interface |
This paper |
cellxgene: https://cellxgene.cziscience.com/collections/b9fc3d70-5a72-4479-a046-c2cc1ab19efc
|
|
| Software and
Algorithms |
|
| Seurat (v4.0) |
Hao
et al., 2021 |
https://satijalab.org/seurat/ |
| R (v3.6.1) |
N/A |
https://www.r-project.org/ |
| Scanpy (v1.7.2) |
Wolf
et al., 2018 |
https://scanpy-tutorials.readthedocs.io/en/latest/index.html |
| Python (v3.7.0) |
N/A |
https://www.python.org/ |
| CellChat (v1.0.0) |
Jin
et al., 2021 |
http://www.cellchat.org/ |
| ToppGene |
Chen
et al., 2009 |
https://toppgene.cchmc.org/ |
| ToppCluster |
Kaimal et al., 2010 |
https://toppcluster.cchmc.org/ |
| ToppCell |
this paper |
https://toppcell.cchmc.org/ |
| EnhancedVolcano (v1.4.0) |
Blighe et al., 2021 |
https://bioconductor.org/packages/release/bioc/html/EnhancedVolcano.html |
| Cellxgene |
N/A |
https://github.com/chanzuckerberg/cellxgene |
