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. 2021 Aug 27;12:701513. doi: 10.3389/fmicb.2021.701513

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Copyright © 2021 Liu, Feng, Wei, Xiao and Zong.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Phylogenomic tree of K. pneumoniae strains of the ST29 complex. This phylogenomic tree of 130002 and 157 genomes of the ST29 complex is based on SNP calling using Snippy v4.6.0 and filtering recombination using Gubbins v2.4.1. The phylogeny was inferred using RAxML v8.2.12 under the GTRGAMMA model with a 1,000-bootstrap test and is annotated and viewed in iTOL v5.7 and FigTree v1.4.4. More information of the genomes is provided in Supplementary Datasheet 1.