Figure 1.

Scatter plots depicting the detected genes measured with two different methods for transcriptome analysis, shown for the melanoma cell line Mel Im in (A) and Mel Juso in (B). The measured signals with log2 are depicted as plots for each gene. The light gray color shows genes that were measured with both methods, the dark gray color shows genes that were not detected (n.d.) with microarray analysis, and the black dots depict genes that were not detected with RNA-seq (genes that were not detected by RNA-seq are listed in Supplementary Table S3). The blue line represents the Spearman correlation between genes that were detected with both methods. The genes named within the plots (labeled in red) are further discussed within the following text. Statistical analysis was performed using R.