Table 4.
Molecule | Sample | Number of Subjects | Isolation Methods | Characterization Methods | Utility | Comments | Authors |
---|---|---|---|---|---|---|---|
TP63, KRT5, CEACAM6 and SFTPB mRNAs | Serum | 54 AC + 16 SCC | Ultracentrifugation | TEM/NTA/WB | Histological classification | 17 miRNAs to be analyzed were selected previously from TCGA database as differentially expressed between AC and SCC. ACTB and SLC25A6 were used as internal references | Cao et al. [136] |
eIF4E RNA | Serum | 99 NSCLC + 40 C | Precipitation | TEM/NTA/WB | Diagnosis Prognosis: stage, distant metastases, OS and PFS |
eIF4E data extracted from TCGA database | Dong et al. [137] |
PD-L1 (1) and IFN-γ (1,2) mRNA | EDTA Plasma | 38 NSCLC | Membrane affinity spin columns | - | (1) Response to treatment (2) PFS |
Quantification by ddPCR with ACTB as internal control | Del Re et al. [138] |
MALAT-1 | Serum | 77 NSCLC + 30 C | Precipitation | TEM/NTA/WB | Diagnosis Prognosis (Lymph node metastasis, TNM stage) |
Quantification by RT-PCR. GAPDH was used for normalization | Zhang et al. [90] |
linc01125 | Serum | 277 NSCLC + 187 C + 5 P + 59 T + 58 COPD | Precipitation | - | Diagnosis Prognosis (stage, OS) |
RNA-Seq for lncRNA profile and subsequent quantification of linc01125 by RT-PCR with spiked in controls | Xian et al. [139] |
FECR | Serum | 35 with limited SCLC and 26 with extensive SCLC +55 C | Affinity Chromatography | TEM/WB | Diagnosis Prognosis (survival) Response to chemotherapy |
RT-PCR with β-actin as control | Li et al. [140] |
circ_0014235 and circ_0025580 | Plasma | 30 SCC + 30 C | Precipitation | - | Diagnosis Prognosis (TNM stage and tumor size) |
circRNA sequencing and confirmation with RT-PCR with GAPDH as internal control | Wang et al. [141] |
circRNA_0056616 | EDTA plasma | 90 AC (42 with lymph node metastasis and 48 without) | Precipitation | TEM/WB | Lymph node metastasis predictor | RT-PCR. Normalization as Wang’s methods | He et al. [142] |
circSATB2 | Serum | 83 NSCLC + 95 C | Ultracentrifugation | TEM/NTA/WB | Diagnosis Prognosis (metastasis detection) |
RT-PCR. GAPDH and U6 were used as internal references and cel-miR-39 as an external reference | Zhang et al. [143] |
circ_0047921, and circ_0007761 (1) circ_0056285 (1,2) |
Serum | Screening set: 30 NSCLC + 45 C Training set: 120 NSCLC + 165 C Validation set 1: 62 NSCLC + 95 C Validation set 2: 63 NSCL + 58 COPD + 46 T |
Precipitation | TEM/NTA/WB/FC | (1) Diagnosis (including early stage) (2) Prognosis: state of progression and lymph-node metastases |
1701 circRNAs initially identified by RNA-seq, 17 of them were differentially expressed and 8 of them were validated by RT-PCR with GAPDH and ACTB as spiked-in controls | Xian et al. [144] |
Abbreviations: AC: adenocarcinoma; C: controls; circRNA: circular RNA; COPD: chronic obstructive pulmonary disease; ddPCR: droplet digital PCR; EV: extracellular vesicles; FC: flow cytometry; LC: lung cancer; miRNA: microRNA; NSCLC: non-small cell lung cancer; NTA: nanoparticle tracking analysis; OS: overall survival; P: pneumonia; PFS: progression-free survival; RT-PCR: real-time polymerase chain reaction; SCC: squamous carcinoma; SCLC: small cell lung cancer; T: tuberculosis; TCGA: The Cancer Genome Atlas; TEM: transmission electron microscopy; TNM: tumor-node-metastasis; WB: Western blot.