Table 2.
Distribution of pleiotropic loci associated with two or more grain architecture related traits
| Chr | Marker | Trait/Effect/−log10(p-value) | Marker Position (bp) and alelles | Candidate gene-Genomic location | Annotation |
|---|---|---|---|---|---|
| 1B | wsnp_Ex_c1600_3051075(IWA2084) |
TKW (+ 1.611) 4.20 KA (+ 0.134) 5.66 |
524,154,547–524,154,747 T-G |
TraesCS1B01G303200 (524153507–524,155,132) |
Protein of unknown function DUF1677,O. sativa |
| 2A |
Excalibur_c12169_1088 (IWB22047) |
TKW (+ 2.176) 6.91 KA (+ 0.576) 5.76 |
82,350,252–82,350,352 A-G |
TraesCS2A01G136800 (82349905–82,354,821) |
Heat shock protein binding (Gos) Heat shock protein DnaJ, cysteine-rich domain (interpros) |
| 5B | RAC875_c9150_2945(IWB61034) |
KA (− 0.318) 5.23 KL (− 0.110) 4.20 |
459,477,406–459,477,506 C-T |
TraesCS5B01G274000 (459476178–459,493,013) |
P-loop containing nucleoside triphosphate hydrolase (interpros) |
| 6A | BobWhite_c5872_589(IWB4014) |
TKW (−1.755) 6.34 KA (−0.516) 5.70 |
602,710,319–602,710,419 C-T |
TraesCS6A01G383800 (602699767–602,711,726) |
Oxidation-reduction process/MF: oxidoreductase activity/MF: NADP binding/MF: oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor/BP: cell redox homeostasis/MF: flavin adenine dinucleotide binding/MF: glutathione-disulfide reductase activity/BP: glutathione metabolic process |
TKW Thousand-kernel weight, KL Kernel length and KA Kernel area, Chr Chromosome, Position (Physical, bp); −log10 (p-value (SNP))