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. 2021 Sep 10;87(19):e01099-21. doi: 10.1128/AEM.01099-21

TABLE 5.

Gene ontology categories that are significantly enriched in terms of biological processes and molecular functions differentially regulated between LEO-treated samples and control samples

GO code Term No. of genes differentially expresseda FDR P value Regulation
Biological process
    0040011 Locomotion 5/32 0.054026 Down
    0071973, 0097588, 0001539, 0048870, 0006928 Cilium or flagellum-dependent cell motility 3/23 0.012148 Down
    0065007 Biological regulation 19/83 0.062751 Down
    0044271 Cellular nitrogen compound biosynthetic process 65/183 1.62E−10 Up
    0006430 Transfer RNA aminoacylation 2/22 0.006264 Up
    0006807 Nitrogen compound metabolic process 87/433 2.16E−08 Up
Molecular function
    0046873 Metal ion transmembrane transporter activity 2/16 0.061105 Down
    0015103 Organic anion transmembrane transporter activity 4/10 0.085316 Down
    0019843 rRNA binding 27/39 1.51E−15 Up
    0003735 Structural constituent of ribosome 36/52 1.00E−15 Up
    0005198 Structural molecule activity 37/59 1.14E−14 Up
    0097159, 1901363 Organic cyclic compound binding 93/436 0.006437 Up
    0003676 Nucleic acid binding 54/175 4.16E−05 Up
    0000049 tRNA binding 6/18 0.009744 Up
    0005488 Binding 113/588 0.048065 Up
    0140101 Catalytic activity, acting on a tRNA 2/43 0.048065 Up
    0004812, 0016875 Aminoacyl-tRNA ligase activity 2/22 0.005088 Up
    0140098 Catalytic activity, acting on RNA 9/64 0.069198 Up
a

Absolute log2 fold change of ≥1; false discovery rate [FDR] P value of ≤0.05 relative to total number of genes in enriched category.