TABLE 5.
Gene ontology categories that are significantly enriched in terms of biological processes and molecular functions differentially regulated between LEO-treated samples and control samples
| GO code | Term | No. of genes differentially expresseda | FDR P value | Regulation |
|---|---|---|---|---|
| Biological process | ||||
| 0040011 | Locomotion | 5/32 | 0.054026 | Down |
| 0071973, 0097588, 0001539, 0048870, 0006928 | Cilium or flagellum-dependent cell motility | 3/23 | 0.012148 | Down |
| 0065007 | Biological regulation | 19/83 | 0.062751 | Down |
| 0044271 | Cellular nitrogen compound biosynthetic process | 65/183 | 1.62E−10 | Up |
| 0006430 | Transfer RNA aminoacylation | 2/22 | 0.006264 | Up |
| 0006807 | Nitrogen compound metabolic process | 87/433 | 2.16E−08 | Up |
| Molecular function | ||||
| 0046873 | Metal ion transmembrane transporter activity | 2/16 | 0.061105 | Down |
| 0015103 | Organic anion transmembrane transporter activity | 4/10 | 0.085316 | Down |
| 0019843 | rRNA binding | 27/39 | 1.51E−15 | Up |
| 0003735 | Structural constituent of ribosome | 36/52 | 1.00E−15 | Up |
| 0005198 | Structural molecule activity | 37/59 | 1.14E−14 | Up |
| 0097159, 1901363 | Organic cyclic compound binding | 93/436 | 0.006437 | Up |
| 0003676 | Nucleic acid binding | 54/175 | 4.16E−05 | Up |
| 0000049 | tRNA binding | 6/18 | 0.009744 | Up |
| 0005488 | Binding | 113/588 | 0.048065 | Up |
| 0140101 | Catalytic activity, acting on a tRNA | 2/43 | 0.048065 | Up |
| 0004812, 0016875 | Aminoacyl-tRNA ligase activity | 2/22 | 0.005088 | Up |
| 0140098 | Catalytic activity, acting on RNA | 9/64 | 0.069198 | Up |
Absolute log2 fold change of ≥1; false discovery rate [FDR] P value of ≤0.05 relative to total number of genes in enriched category.