TABLE 6.
Sequence and genotype of cell lines for Rep1 microsatellitea near the SNCA gene.
| Cell line→ genotypeb | TC | TT | TC | TA | CA | Genotype according to length |
| Reference sequence→ 0/0 | 10 | 1 | 10 | 8 | 10 | 259/259 |
| yemz→ 0/1 | 11 | 1 | 9 | 10 | 10 | 259/263 |
| diku→ 1/1 | 10/11 | 1 | 10 | 8 | 11/10 | 261/261 |
| lepk→ 0/1 | 11 | 1 | 11 | 7 | 10 | 259/261 |
| melw→ 0/1 | 11 | 1 | 11 | 7 | 10 | 259/261 |
| zihe→ 0/0 | 10 | 1 | 10 | 8 | 10 | 259/259 |
| uilk→ 1/1 | 10 | 1 | 10 | 8 | 11 | 261/261 |
| zapk→ 0/1 | 10 | 1 | 11 | 7 | 11 | 259/261 |
| qolg→ 0/1 | 10 | 1 | 10 | 8 | 11 | 259/261 |
aMicrosatellite Rep1 consists of dinucleotide combination that can differ in number of repeats and thus in length (TC)x(TT)(TC)y(TA)z(CA)w → PCR products run at length of 259 bp, 261 pb, and 263 pd. The longer versions 261 bp and 263 bp have been associated with risk for PD and increased α-SYNUCLEIN expression.
bWhen sequence is different to reference sequence only on one allele, only this deviant sequence is listed in the table.