Table 1.
SARS-CoV-2 Brazilian variants with indels at NTD of the spike protein.
| Lineage | RBD | NTD indel | n | Earliest sequence | Last sequence |
|---|---|---|---|---|---|
| B.1.1.28 and B.1.1.33 |
− | ∆69-70 | 4 | 28 March 2021 | 29 March 2021 |
| ∆144 | 7 | 19 June 2020 | 16 January 2021 | ||
| ∆143-144 | 1 | 28 September 2020 | − | ||
| ∆141-144 | 1 | 2 January 2021 | − | ||
| P.2 | E484K | ∆144 | 2 | 14 January 2021 | 21 January 2021 |
| ∆141-144 | 1 | 30 March 2021 | − | ||
| P.1 | K417T | ∆69-70 | 16 | 27 January 2021 | 27 April 2021 |
| E484K | ∆144 | 11 | 12 January 2021 | 12 April 2021 | |
| N501Y | ∆143-144 | 2 | 19 April 2021 | 26 April 2021 | |
| ∆141-144 | 3 | 26 January 2021 | 14 April 2021 | ||
| ∆189-190 | 2 | 27 January 2021 | 15 March 2021 | ||
| ∆242-244 | 1 | 23 February 2021 | − | ||
| P.1 (P.1-like-I) |
K417T E484K N501Y |
ins214ANRN | 6 | 23 December 2020 | 5 April 2021 |
| N.10 | V445A E484K |
∆141-144 ∆211 ∆256-258 |
16 | 29 December 2020 | 26 April 2021 |
Sequencing depth plots of the samples bearing indels are available in Supplementary Fig. S1.