Fig. 3.

Violin-plots showing comparison of gene detection per cell between kallisto and Cell Ranger across selected examples (a, b, c, d, e, f). Cell Ranger datasets contain an additional cell population with lower gene detections, not present in the kallisto datasets (at and below dashed lines). This observation was not seen for the human datasets (f). The remaining datasets can be found in Additional file 1: Fig. S2 and S3