Table 1.
phage infection strategya,b |
detection methods | |||||||
---|---|---|---|---|---|---|---|---|
single-cell level |
population level | |||||||
property | lytic infection | productive, chronic infection | non-productive, chronic infection | lysogeny, integrated prophage | lysogeny, non-integrated prophage | pseudolysogeny | carrier state infection | |
production of viral particles | + | + | +d | − | − | − | + | plaque assay; analysis of the presence of particles; imaging |
progeny release by cell lysis | + | − | − | − | − | − | + | one-step growth assay; imaging |
progeny release by budding or extrusion | − | + | − | − | − | − | + | one-step growth assay; imaging |
no progeny release | − | − | + | + | + | + | − | plaque assay from the supernatant (lack of particles in the supernatant) |
episome | − | ±c | + | − | + | + | − | sequencing |
genome integration | − | ±c | − | + | − | − | − | Southern blot of electrophoresis-separated cellular DNAs; sequencing |
inducible | − | ± | n.d. | + | + | − | − | physical or chemical induction |
asymmetric division of the episomes | − | − | − | − | − | + | − | single-cell PCR; single-cell imaging |
mix of sensitive and resistant bacteria | − | − | − | − | − | − | + | analysis of viral sensitivity |
aPlus sign indicates the possible presence of the infection property in the phage life cycle strategy, whereas minus sign indicates the lack of that specific attribute.
bSuperinfection exclusion can be a property of any of the phage infection strategies (not necessarily in all cells of the infected population).
cPhages displaying productive, chronic infection either replicate episomally or integrate into the host genome.
dIn non-productive, chronic infection progeny phage particles are produced within the host cell without lysis.