Table 2.
Similarity between Borrelia pyrG gene sequences from GenBank and the wild rodents captured in this study†.
Genospecies of Borrelia | Strains | Origin of Borrelia strain | pyrG accession number | M10-3H | M10-5H | M10-8Sp | M10-11H | M10-11Lu | M10-11Sp | M11-1H | M11-1K | M11-6H | M11-6Sp | M11-13H | M11-13Sp | M11-15H | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Biological | Geographic | ||||||||||||||||
B. burgdorferi sensu stricto | B31 | Ixodes scapularis | USA | AE000783 | 91.9 | 91.9 | 100 | 91.9 | 91.9 | 92.4 | 92 | 91.9 | 92 | 92.1 | 91.7 | 92 | 92 |
297 | Human cerebrospinal fluid | USA | KF170281 | 91.4 | 91.6 | 99.4 | 91.4 | 91.4 | 91.8 | 91.6 | 91.4 | 91.6 | 91.7 | 91.3 | 91.6 | 91.6 | |
B. garinii | 20047 | I. ricinus | France | CP028861 | 92.9 | 92.6 | 93.2 | 92.9 | 92.9 | 98.4 | 92.9 | 92.9 | 92.9 | 92.7 | 92.6 | 92.9 | 92.9 |
NP81 | I. persulcatus | Japan | AB555842 | 83 | 83.9 | 83.3 | 83 | 83 | 88.4 | 83 | 83 | 83 | 82.8 | 82.7 | 83 | 83 | |
SCCH-7 | Peromyscus gossypinus (cotton mouse) | USA | KP795356 | 92.9 | 92.6 | 93.2 | 92.9 | 92.9 | 98.4 | 92.9 | 92.9 | 92.9 | 92.7 | 92.6 | 92.9 | 92.9 | |
B. afzelii | BO23 | Human skin | Sweden | CP018262 | 99.1 | 98.9 | 92.1 | 99.1 | 99.1 | 93.3 | 99 | 99.1 | 99 | 98.8 | 99 | 99 | 99 |
HLJ01 | Human | China | CP003882 | 99.4 | 99.2 | 92.1 | 99.4 | 99.4 | 93.2 | 99.6 | 99.4 | 99.6 | 99.4 | 99.6 | 99.6 | 99.6 | |
B. bissettii | DN127 | I. pacificus | USA | CP002746 | 92.6 | 92 | 94.4 | 92.6 | 92.6 | 93.5 | 92.6 | 92.6 | 92.6 | 92.1 | 92.9 | 92.6 | 92.6 |
B. spielmanii | A14S | Human skin | Netherlands | ABKB02000009 | 92.9 | 92.6 | 93.3 | 92.9 | 92.9 | 92.1 | 92.6 | 92.9 | 92.6 | 92.6 | 92.6 | 92.6 | 92.6 |
B. valaisiana | VS116 | I. ricinus | Switzerland | ABCY02000001 | 91.3 | 91.3 | 93.5 | 91.3 | 91.3 | 92.9 | 91.1 | 91.3 | 91.1 | 91.3 | 90.8 | 91.1 | 91.1 |
B. sinica | CMN3 | Niviventer sp. | China | AB526135 | 82.5 | 83.5 | 81.8 | 82.5 | 82.5 | 82.6 | 82.4 | 82.5 | 82.4 | 82.2 | 82.1 | 82.4 | 82.4 |
†pyrG, CTP synthase gene.