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. 2021 Sep 15;18(12):875–884. doi: 10.1038/s41575-021-00511-8

Table 2.

Selected milestones and current and future research objectives in pathogenesis and genetics

Mechanism or feature (time frame) Milestones Current and future research objectives
Cereal protein chemistry and genetics (1900s–) Osborne66 characterized cereal grain proteins as ‘prolamins’. Starting with wheat α-gliadin, protein and gene sequencing provided key information for defining candidate toxic and/or antigenic gluten peptides67,68 Refining understanding of a safe threshold for dietary gluten; improving food testing for gluten; breeding cereals with reduced immunogenicity; defining other cereal components that trigger symptoms; understanding gluten digestion, absorption and systemic handling in health and disease
Environmental antigens (1950s–) Protease-resistant peptides from prolamins in wheat, rye, barley and, possibly, oats69 drive coeliac disease More comprehensive molecular characterization of targets for gluten-driven immunity in all genetic subtypes of coeliac disease; triggers for disease onset; microbiome and infections as modifiers of gluten immunity and tissue injury
Genetic susceptibility (1970s–) Starting with HLA associations70 and defining HLA-DQ2.5 as the primary genetic susceptibility, subsequent genome-wide studies identify multiple non-HLA linkages and genes in common with other HLA-linked autoimmune diseases such as type 1 diabetes mellitus71 Precise localization and functional characterization of germline non-MHC genes and any additional MHC genes implicated in coeliac disease and gluten immunity; understanding gene–gene interactions, DNA modification and acquired T cell and B cell receptor mutations facilitating gluten immunity
Animal models, ex vivo tissue and in vitro cell culture (1970s–) Intestinal biopsies, cell lines and clones developed as bioassays for gluten; gluten immunity tested in humanized HLA-transgenic mice from 2000s72 Refinement of bioengineering, organoid and microfluidic technologies to develop organ-on-a-chip models to complement humanized mouse models
Autoimmunity in coeliac disease (1980s–) Endomysial antibody later determined to recognize tissue transglutaminase 2, the main autoantigen for gluten-dependent autoantibodies in active coeliac disease45 Molecular characterization of targets for autoimmunity accounting for extraintestinal manifestations; more detailed understanding of humoral and cellular autoimmunity, and its relationship to gluten immunity
Host receptor-mediated recognition of gluten (1990s–) The molecular and cellular basis for recognition of gluten was determined by cloning intestinal gluten-specific CD4+ T cells exclusively from patients with coeliac disease73, which were complemented by HLA-DQ–peptide binding assays, determining epitope restriction elements and, more recently, structural biology studies9,74 Refining understanding of gluten recognition and contributions of innate and adaptive immunity or other pathways facilitating gluten-mediated intestinal and extraintestinal manifestations of coeliac disease; expanding understanding of antigen-presenting cells including B cells specific for gluten and transglutaminase
Immune–intestinal epithelial cell interactions (1990s–) Identification of crucial innate immune pathways involving IEC–NK cell receptor interactions supported by IL-15 that are conducive to atrophy75 Characterization of the role of IEC–NK cell receptor interactions across coeliac disease states and further elucidation of signals leading to licensing of cytotoxicity
Extraintestinal immune response to dietary gluten (2000s–) Gluten ingestion drives expansion of peripheral blood gut-homing gluten-reactive CD4+ T cells and CD8+ T cells days later29. Serum cytokines, especially IL-2, are elevated within hours76 Improved characterization of the sources and effects of gluten-stimulated systemic cytokine release; understanding of the cause and effects of intestinal CD8+ T cell expansion in blood and gut tissue; establishing phenotypic and functional changes in gluten-specific CD4+ T cells
Additional environmental triggers (2010s–) Resurgence of the microbial hypothesis supported by sequencing technology and longitudinal at-risk cohorts. Used in combination with humanized models, microorganisms could influence key mechanisms in coeliac disease (e.g. gluten metabolism, loss of tolerance, molecular mimicry)77 Continued identification of microorganisms and mechanisms that protect or incite breakdown of tolerance to gluten; identify and validate new microbial therapeutics that modulate pathogenic targets in coeliac disease
Gluten peptide-specific activation and modulation of gluten immunity (2010s–) Systemically administered immunogenic gluten peptides cause acute digestive symptoms and immune activation with subsequent tachyphylaxis11 Enhanced understanding of natural mechanisms that regulate gluten immunity and disease manifestations; understanding of the basis for potential coeliac disease versus highly symptomatic disease; more complete understanding of molecular events enabling development of neoplasia associated with coeliac disease

IEC, intestinal epithelial cell; MHC, major histocompatibility complex; NK cell, natural killer cell.