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Pan-variant recall across the locus frequency spectrum. Every SNP occurs in a locus, which is present in some subset of the full set of 20 genomes. SNPs in the golden truth set are broken down by the number of samples the locus is present in. In panel A, we show the absolute count of pan-variants found and in panel B we show the proportion of pan-variants found (PVR) for pandora (dotted line), nanopolish, and medaka with Nanopore data
