Table 1.
The MIKCc MADS-box protein family in barley compared to rice.
| Arabidopsis | Oryza name | Oryza ID | Barley ID Morex1 | Alt sequence | Barley ID Morex2 | Legacy barley names | |
|---|---|---|---|---|---|---|---|
| A-class | AP1, CAL, FUL | MADS14 | Os03g0752800 | HORVU5Hr1G095630.3 | HORVU.MOREX.r2.5HG0424650.1 | BM5, VRN1 | |
| HORVU1Hr1G047550.1 | HORVU.MOREX.r2.1HG0039100.1 | ‘HvAP1b’ | |||||
| MADS15 | OS07G0108900 | HORVU2Hr1G063800.7 | AK249833.1 | HORVU.MOREX.r2.2HG0129220.1 | BM8 | ||
| MADS18 | OS07G0605200 | *HORVU0Hr1G003020.3 | AK361227.1 | HORVU.MOREX.r2.2HG0105150.1 | BM3 | ||
| MADS20 | OS12G0501700 | No equivalent | |||||
| B-class | PI | MADS2 | OS01G0883100 | HORVU3Hr1G091000.8 | HORVU.MOREX.r2.3HG0256620.1 | ||
| MADS4 | OS05G0423400 | HORVU1Hr1G063620.2 | HORVU.MOREX.r2.1HG0051900.1 | ||||
| AP3 | MADS16 | OS06G0712700 | *HORVU7Hr1G091210.4 | AK373398.1 | HORVU.MOREX.r2.7HG0598100.1 | ||
| C-class | AG, SHP1/2, STK | MADS3 | OS01G0201700 | HORVU3Hr1G026650.1 | HORVU.MOREX.r2.3HG0202320.1 | HvAG1 | |
| MADS58 | OS05G0203800 | HORVU1Hr1G029220.1 | HORVU.MOREX.r2.1HG0024570.1 | HvAG2 | |||
| D-class | MADS13 | OS12G0207000 | HORVU1Hr1G023620.1 | HORVU.MOREX.r2.1HG0019750.1 | |||
| MADS21 | OS01G0886200 | HORVU1Hr1G064150.2 | HORVU.MOREX.r2.1HG0052300.1 | ||||
| E-class | SEP1/2/4 | MADS1 | OS03G0215400 | HORVU4Hr1G067680.2 | HORVU.MOREX.r2.4HG0329790.1 | HvMADS7 | |
| MADS5 | OS06G0162800 | HORVU7Hr1G025700.6 | HORVU.MOREX.r2.7HG0543420.1 | ||||
| MADS34 | OS03G0753100 | HORVU5Hr1G095710.1 | HORVU.MOREX.r2.5HG0424690.1 | ||||
| SEP3 | MADS7 | OS08G0531700 | HORVU7Hr1G054220.1 | HORVU.MOREX.r2.7HG0567840.1 | |||
| MADS8 | OS09G0507200 | HORVU5Hr1G076400.1 | HORVU.MOREX.r2.5HG0409590.1 | M9 | |||
| AGL6 | AGL6/13 | MADS6 | OS02G0682200 | HORVU6Hr1G066140.9 | HORVU.MOREX.r2.6HG0500990.1 | AGL6 | |
| MADS17 | OS04G0580700 | No equivalent | |||||
| FCL1/2, AGL27/31 | No equivalent in rice/barley | ||||||
| AGL14/19/42, SOC1 | MADS50 | OS03G0122600 | No horvu number | AK368348.1 | HORVU.MOREX.r2.4HG0343680.1 | SOC1-1 | |
| MADS56 | OS10G0536100 | *HORVU1Hr1G051660.8 | JN673265 | *HORVU.MOREX.r2.1HG0042540.1 | SOC1-L | ||
| AGL24, SVP(AGL22) | MADS22 | OS02G0761000 | HORVU6Hr1G077300.1 | HORVU.MOREX.r2.6HG0511230.1 | BM10 | ||
| MADS55 | OS06G0217300 | *HORVU7Hr1G036130.1 | AK356695.1 | HORVU.MOREX.r2.7HG0551090.1 | VRT2 | ||
| MADS47 | OS03G0186600 | HORVU4Hr1G077850.3 | HORVU.MOREX.r2.4HG0338120.1 | BM1 | |||
| AGL12 | MADS26 | OS08G0112700 | HORVU7Hr1G076310.14 | AK370468.1 | HORVU.MOREX.r2.7HG0585040.1 | ||
| MADS33 | OS12G0206800 | No horvu number | AK250031.1 | HORVU.MOREX.r2.2HG0140850.1 | |||
| AGL16/17/44/21 | MADS23 | OS08G0431900 | HORVU1Hr1G008290.1 | HORVU.MOREX.r2.1HG0006360.1 | |||
| HORVU1HR1G008300.3 | HORVU.MOREX.r2.1HG0006350.1 | M23b | |||||
| MADS25 | OS04G0304400 | M25a HORVU5Hr1G000480.1 | HORVU.MOREX.r2.5HG0349390.1 | ||||
| M25b HORVU5Hr1G000370.3 | *HORVU.MOREX.r2.5HG0349480.1 | ||||||
| M25c HORVU7Hr1G023940.2 | HORVU.MOREX.r2.7HG0541840.1 | ||||||
| M25d HORVU7Hr1G024000.1 | HORVU.MOREX.r2.7HG0541900.1 | ||||||
| MADS27 | OS02G0579600 | HORVU2Hr1G080490.1 | HORVU.MOREX.r2.2HG0143360.1 | ||||
| MADS57 | OS02G0731200 | *HORVU6Hr1G073040.13 | AK363243.1 | HORVU.MOREX.r2.6HG0507700.1 | |||
| B-sister | ABS | MADS29 | OS02G0170300 | HORVU6Hr1G032220.8 | HORVU.MOREX.r2.6HG0473980.1 | ||
| MADS30 | OS06G0667200 | HORVU7Hr1G108280.4 | AK375718 | HORVU.MOREX.r2.7HG0611760.1 | |||
| MADS31 | OS04G0614100 | HORVU2Hr1G098930.2 | *HORVU.MOREX.r2.2HG0158040.1 | ||||
| No At equivalent | MADS32 | OS01G0726400 | HORVU3Hr1G068900.3 | *HORVU.MOREX.r2.3HG0237490.1 | |||
The Arabidopsis co-orthologues are given per protein class where available, as the relation within classes is generally not homologous.
*
An incomplete sequence or protein model.