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. 2021 Sep 15;19:203. doi: 10.1186/s12915-021-01123-z

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 11 — Expression levels of genes that have an inserted methylated repeat or that overlap with methylated repeats. A Expression levels (log-normalized transcripts per million) of genes are shown. A strong silencing effect is shown for genes that contain a methylated repeat, both in germinated spores and during late infection. Genes that are near a methylated repeat (up to 500 bps) also show suppressed expression. B This gene silencing is more pronounced if a TE has a late wave sRNA mapping to it (TEs^sRNA+), both for young and old TEs