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. 2021 Sep 1;13(9):evab198. doi: 10.1093/gbe/evab198

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Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution 2021. This work is written by a US Government employee and is in the public domain in the US.

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Fig. 4. — Cis-eQTL analysis facilitates assignment and reconstruction of probable proximal regulatory elements. (A) Potri.001G400201 Manhattan plot depicting the cis-eQTL interval, the red dot is the most significant SNP, with a significant match to a homeobox TFBS. (B) The reconstructed homeobox TFBS from the most significant SNP in Potri.001G400201’s cis-eQTL interval. (C) Potri.002G037600 Manhattan plot depicting the cis-eQTL interval, the three points within the exon are all nonsynonymous SNPs. (D) SNP effect on gene expression for Potri.002G037600, for three exonic SNPs, Chr02:2428758, Chr02:2428788, and Chr02:2428932.