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. 2021 Sep 3;12:682155. doi: 10.3389/fmicb.2021.682155

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Copyright © 2021 Tsushima, Narusaka, Gan, Kumakura, Hiroyama, Kato, Takahashi, Takano, Narusaka and Shirasu.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Conservation patterns of the updated proteomes from 24 ascomycete fungi. (A) Number of proteins assigned to orthogroups. A maximum-likelihood species phylogeny was drawn based on the alignment of single-copy orthologs obtained using OrthoFinder. Bootstrap values are based on 1,000 replicates. The yellow box indicates Colletotrichum species. SCER: Saccharomyces cerevisiae, ANID: Aspergillus nidulans, LEPM: Leptosphaeria maculans, BIMA: Bipolaris maydis, SCSC: Sclerotinia sclerotiorum, BOTC: Botrytis cinerea, EUTL: Eutypa lata, MGOR: Magnaporthe oryzae, NCRA: Neurospora crassa, PODA: Podospora anserine, CHGL: Chaetomium globosum, METR: Metarhizium robertsii, TRIV: Trichoderma virens, FUVA: Fusarium vanettenii, FUGR: Fusarium graminearum, FUOX: Fusarium oxysporum f. sp. lycopersici, VDAH: Verticillium dahliae, CFIO: C. fioriniae, CGRA: C. graminicola, CINC: C. incanum, CMAF: C. higginsianum, CCHL: C. chlorophyti, CFRU: C. fructicola, and CORB: C. orbiculare. (B) Heatmap showing the percentage of orthogroups shared between each species pair. The upper panel shows the conservation of AP orthogroups and the lower panel shows the conservation of EC orthogroups. Each pair-wise percentage of shared orthogroups is calculated against the number of orthogroups in a species on the longitudinal axis. It is noted that panels are not mirrored because the number of orthogroups of each species differs. Colletotrichum species are highlighted with yellow boxes. (C) Conservation patterns of effector candidates from Colletotrichum species. The bar chart indicates the number of effector candidates in orthogroups by conservation pattern.