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Cancer Medicine logoLink to Cancer Medicine
. 2021 Aug 1;10(18):6428–6441. doi: 10.1002/cam4.4161

Integrated pan‐cancer of AURKA expression and drug sensitivity analysis reveals increased expression of AURKA is responsible for drug resistance

Noushin Miralaei 1, Ahmad Majd 1,, Kamran Ghaedi 2,, Maryam Peymani 3, Masoomeh Safaei 4
PMCID: PMC8446408  PMID: 34337875

Abstract

Introduction

The AURKA gene encodes a protein kinase involved in cell cycle regulation and plays an oncogenic role in many cancers. The main objective of this study is to analyze AURKA expression in 13 common cancers and its role in prognostic and drug resistance.

Method

Using the cancer genome atlas (TCGA) as well as CCLE and GDSC data, the level of AURKA gene expression and its role in prognosis and its association with drug resistance were evaluated, respectively. In addition, the expression level of AURKA was assessed in colorectal cancer (CRC) and gastric cancer (GC) samples. Besides, using Gene Expression Omnibus (GEO) data, drugs that could affect the expression level of this gene were also identified.

Results

The results indicated that the expression level of AURKA gene in 13 common cancers increased significantly compared to normal samples or it survived poorly (HR >1, p < 0.01) in lung, prostate, kidney, bladder, and uterine cancers. Also, the gene expression data showed increased expression in CRC and GC samples compared to normal ones. The level of AURKA was significantly associated with the resistance to SB 505124, NU‐7441, and irinotecan drugs (p < 0.01). Eventually, GEO data showed that JQ1, actinomycin D1, and camptothecin could reduce the expression of AURKA gene in different cancer cell lines (logFC < 1, p < 0.01).

Conclusion

Increased expression of AURKA is observed in prevalent cancers and associated with poor prognostic and the development of drug resistance. In addition, some chemotherapy drugs can reduce the expression of this gene.

Keywords: AURKA, biomarker, cancer, drug resistance, prognosis


The expression level of AURKA gene in 13 common cancers increased significantly compared to normal. The level of AURKA was significantly associated with resistance to SB 505124, NU‐7441, and irinotecan drugs (p < 0.01). Actinomycin D1 and camptothecin could reduce the expression of AURKA gene in different cancer cell lines based on GEO data.

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1. INTRODUCTION

One of the biggest health problems in the world is cancer, and based on estimates from the world health organization (WHO), cancer is the first or second cause of death before the age of 70 years.1, 2, 3 Cancers can have many forms based on the location and cell of origin, and they are known to be genomic diseases. Scientists are faced with variety of cancer challenges; however, tumor heterogeneity, which has the potential to be seen in the expression level of genes, mutations, epigenetic, and microenvironment, has been on the top of attentions.4 Therefore, what can help controlling, treating, and diagnosing cancers is identifying key genes or the vital pathways among all sorts of cancers.5, 6

AURKA is a serine/threonine kinase that is crucial in controlling of mitosis progression, centrosome maturation/separation, and mitotic spindle function.7, 8, 9 The high expression of AURKA has been seen in many sorts of cancers such as ovarian, liver, and colorectal ones making some oncogenic factors like c‐MYC, NF‐kB, and β‐catenin active, and it could lead to chromosomal instability.10, 11 Besides, recent studies have mentioned that AURKA probably takes part in cancer development and progression as well as tumorigenesis.12, 13 In fact, the high level of AURKA leads to blockage of TP53 as a tumor suppressor by phosphorylation at Ser215 and Ser315.14, 15, 16 Actually, the indirect relation between the expression level of TP53 and AURKA can promote carcinogenesis and progression as a negative feedback.17, 18 Moreover, previous studies have indicated that the overexpression of AURKA in some cancers such as stomach, bladder, and colorectal ones are in inverse relation to disease prognosis.19, 20

Recent studies have indicated that AURKA can be an excellent candidate for kinases inhibitors.21, 22 Since the overexpression of AURKA could stop apoptosis, and promote cancer cell proliferation, the AURKA inhibitors (AKIs) have the ability to inhibit the expression of this gene so that the cancer cell would cease to spread and migrate.23 As various studies have suggested that, some AKIs have been utilized in preclinical and clinical studies.17 Some SNP polymorphisms could increase the risk of cancer in individuals such as the AURKA rs2273535 polymorphism in breast cancer.24 The expression level of AURKA could be utilized in many cancers as a biomarker that might detect some cancers at the beginning levels.25

Many studies have shown that the AURKA gene has an oncogenic role in some cancers, but its expression in some cancers remains unknown. Also, the relation between this gene and drug sensitivity and resistance has not been evaluated, and drugs that affect the expression of this gene are less known. In this study, using the cancer genome atlas (TCGA) data as well as colorectal cancer (CRC) and GC samples, AURKA expression levels were examined in 13 common cancers. The role of this gene in resistance, drug sensitivity, and drugs affecting was also investigated using PharmacoDB and GEO data. The results revealed that the AURKA expression level in all prevalent cancers increased significantly compared to normal samples, and that it was associated with a poor prognosis in part of cancers. Besides, drugs affecting the expression of this gene were evaluated and can be used in samples with high levels of AURKA expression.

2. MATERIALS AND METHODS

2.1. Data acquisition

To analyze the expression level, mutation, and the relation of AURKA with clinical information, TCGA data were utilized. Data processing was performed in accordance with human rights protection and access to TCGA data policies. Based on Table 1, the 13 cancers RNA‐seq data extracted from TCGA in HTseq‐count format including tumor and normal samples. The TCGAbiolinks packages were utilized to process and prepare.26 The data were normalized by edgeR and limma (Voom method) packages which are able to trim some genes with a low level of expression, and afterward, the expression level of each gene was brought into log2.27 These data were implemented to analyze the expression level of genes, to correlate between many items, and to associate in gene expression and prognostic. DNA‐Seq data from TCGA were used to evaluate the mutation and the type of it in AURKA. In this regard, MAF data for all 13 common cancers were downloaded with Pipeline Mutect2.28 The maftools package was used to display and calculate the type and frequency of mutations in the AURKA gene.29

TABLE 1.

Information about 13 common cancers based on the TCGA database

Project ID Cancer name Number of normal samples Number of tumor samples
BLCA Bladder urothelial carcinoma 19 414
BRCA Breast invasive carcinoma 113 1109
COAD Colon adenocarcinoma 41 480
HNSC Head and neck squamous cell carcinoma 44 502
LIHC Liver hepatocellular carcinoma 50 374
KIRP Kidney renal papillary cell carcinoma 32 289
KIRC Kidney renal clear cell carcinoma 72 539
KICH Kidney chromophobe 24 65
LUSC Lung squamous cell carcinoma 42 502
LUAD Lung adenocarcinoma 59 535
STAD Stomach adenocarcinoma 32 375
PRAD Prostate adenocarcinoma 52 499
UCEC Uterine corpus endometrial carcinoma 35 552

2.2. Prognosis assessment

TCGA clinical data for 13 common cancers were utilized to assess the relation of the expression of AURKA with the prognosis. For this purpose, the latest update of clinical data for each cancer sample was downloaded by the TCGAbiolinks package. At first, in order to trim the clinical data, NA data were eliminated. Then the patients whose days of life were 1 or 0 were removed. At the beginning, to assess the prognosis, normal samples were omitted from the expression matrix, and the data were taken in scale mode. In the next step, clinical data were added for each sample and cox regression test was performed to evaluate the association between AURKA expression and patients’ prognosis. Finally, Kaplan–Meier test was performed to approve the data.

2.3. Expression network and signal pathway, identification of drug resistance and sensitivities

Using the expression network and GEO (gene expression omnibus) data, the pathway that the AURKA gene can have an activity on is recognized. For this purpose, all the genes that were commonly expressed in 13 common cancers were identified, and all data were integrated. The SVA package was applied to remove Bach effects from data integration.30 Finally, the correlation test was used for AURKA expression and all genes. Next, the genes with a correlation coefficient of more than 0.7 (R > 0.7) and a significance of less than 0.01 (p < 0.01) were selected for expression network and to identify signaling pathway. Also, the ClueGo application in Cytoscape was implemented for data enrichment and drawing cross talk between identified pathways based on Reactome (https://reactome.org) database. CCLE data (https://portals.broadinstitute.org/ccle) and GDSC database (https://www.cancerrxgene.org) for checking the role of AURKA in drug resistance, sensitivity, and susceptibility were used by PharmacoGx package. Meanwhile, processed data from both databases were downloaded and studied to examine the correlation of AURKA expression and IC50 of different drugs. Besides, the GEO data were implemented to verify the expression network data and to recognize the drugs that are able to lower the level of the AURKA in all types of cancers. To achieve this objective, using the keywords AURKA, cancer, and treatment, the approved studies were selected. Then, raw data were downloaded and initial preprocessing including background correction, data normalization, and data log2 transformation were performed.

2.4. Sample collection, RNA extraction, cDNA synthesis, and RT‐qPCR

This study was approved by the Biomedical Ethics Committee of the Islamic Azad University of Tehran North with the Ethics Code of IR.IAU.TNB.REC.1400.005. The CRC samples including 30 tumor samples and 30 adjacent normal samples, and also gastric cancer samples including 23 tumor samples and 23 adjacent normal samples were obtained from the Tumor Bank of Iran. All samples were approved by a professional pathologist and collected with the patient's consent, and they were kept in liquid nitrogen before use. Clinical information of these samples was shown in Table 2. For total RNA extraction from samples, at first, these tissues were washed three times with PBS to remove contamination as well as necrotic cells. Then RNA extraction was performed with TRIzol (Sigma‐Aldrich) kits, according to the manufacturer's instruction. The extracted RNA for each tissue was treated with DNase I to eliminate possible DNA contamination. After that, cDNA synthesis was performed by cDNA synthesis kit (Yekta Tajhiz, Iran) based on original protocol for all samples. The AURKA and CCNB1‐specific primers were designed by NCBI (https://www.ncbi.nlm.nih.gov/tools/primer‐blast) which these sequences are F: 5′‐TGTGCCTTAACCTCCCTATTC‐3′ and R: 5′‐AACCTTGCCTCCAGATTATGA‐3′ for AURKA and F: 5′‐TGCAGGCCAAAATGCCTATG‐3′ and R: 5′‐ACCAAAATAGGCTCAGGCGA‐3′ for CCNB1. To assess the level of expression, RT‐qPCR was utilized with using SYBR Green PCR Master Mix (Yekta Tajhiz), 10 pmol/µl of each primer, and 50 ng cDNA in a final volume of 20 µl for each reaction. GAPDH (F: 5′‐TGCCGCCTGGAGAAACC‐3′, R: 5′‐TGAAGTCGCAGGAGACAACC‐3′) was considered as an internal control. All measurements were carried out in triplicate and data were analyzed by ΔCt method.31

TABLE 2.

Clinical information for CRC and GC samples

Cancer name Characteristic Number (N = 30)
CRC Age
<50 9
>50 21
Gender
Male 18
Female 12
TNM stage
I 5
II 11
III 9
IV 5
Tumor size (cm)
<5 12
>5 18
GC Age
<50 8
>50 15
Gender
Male 9
Female 14
TNM stage
I 3
II 9
III 6
IV 5
Tumor size (cm)
<5 16
>5 7

2.5. Statistics and software

All gene expression level data were performed in three replications and displayed as ±SD, and Wilcoxon test was used to evaluate the significance of tumor samples compared to normal ones. Mann–Whitney test was employed to evaluate the level of TCGA data expression. In addition, Pearson correlation test was used to identify the correlation of genes with AURKA. Log‐rank test was employed to make an assessment of the association of AURKA expression with patients’ prognosis. Significance level in all statistical tests of this study was considered less than 0.01 (p < 0.01). In this study, Cytoscape (v 3.7), R programming language (V 4.2.1), and GraphPad Prism (v 3.8) were used.

3. RESULTS

3.1. Pan‐cancer: Increased AURKA expression level in common cancers

Since the expression level of the AURKA gene has not been exactly determined in some types of cancers yet, the RNA‐seq data in the TCGA database were employed to evaluate the expression of AURKA in the 13 most prevalent cancers. The AURKA expression levels in all common cancers including bladder (BLCA), breast (BRCA), colorectal (COAD), head and neck (HNSC), liver (LIHC), some types of kidney (KIRP, KIRC, and KICH), various types of lung (LUSC and LUAD), gastric (STAD), prostate (PRAD), and uterine (UCEC) increased significantly compared to normal samples of each cancer (Figure 1A–M, p < 0.001). Furthermore, the similar results obtained when the expression level of AURKA was assessed in the pair samples (Figure S1, p < 0.001). The evaluation of AURKA transcription level in CRC and GC samples using RT‐qPCR was used to confirm the TCGA data. The results showed that the expression level of the AURKA in CRC (Figure 1N) and GC (Figure 1O) samples doubled compared to adjacent normal samples (p < 0.01). Furthermore, ROC diagrams for this gene revealed that AURKA expression level could be an excellent biomarker for separating cancer cells from normal cells (Figure 2, p < 0.001). These results suggested that this gene took part in the onset and progression of prevalent cancer and might be a suitable therapeutic target for many types of cancers.

FIGURE 1.

FIGURE 1

AURKA indicated significant upregulation in prevalent cancers compared to normal tissue. (A–M) The expression levels of AURKA in 13 prevalent cancers are shown based on TCGA data. The normalized data and logarithmic scale based on 2 were used to draw graphs. (N–O) RT‐qPCR data are shown for CRC and GC specimens. Relative expression levels were shown according to 2−Δct. Data were presented as means ± SD of three independent replicates of experiments (****p < 0.0001, ***p < 0.001, **p < 0.01)

FIGURE 2.

FIGURE 2

AURKA expression level can be recognized as an excellent biomarker for detecting cancer specimens. The AURKA level in normal and cancerous samples was used for ROC analysis based on TCGA data. AUC greater than 0.9 is known as excellent biomarkers

3.2. Involvement of AURKA in cell cycle signaling and TP53 pathways in prevalent cancers

A co‐expression network was used to identify the pathways in which AURKA could be involved. All available RNA‐seq data for all 13 common cancers (TCGA data) were merged to achieve the expression of 21,543 genes in 6850 cancers and normal samples. A correlation test was taken between AURKA expression level and all genes, and AURKA‐related genes were displayed in Figure 3A (R > 0.7, p < 0.01). Based on gene enrichment results, the AURKA gene was associated with genes that regulate the cell cycle pathway as well as the p53 pathway (Figure 3B). To confirm the obtained outcomes from the co‐expression network, the expression level of CCNB1 that it was in the co‐expression network (Figure 3A, blue node) and involved in the cell cycle and p53 pathways was evaluated in CRC and GC samples. The results indicated that the level of CCNB1 was upregulated in CRC and GC samples compared to normal adjacent samples (Figure 3C). Moreover, the correlation test results between the levels of AURKA with CCNB1 indicated the strong and significant association in all samples (Figure 3C). In fact, mentioned results confirm the obtained co‐expression network. Also, the study with access number GSE57931 was used to verify the results. This study showed the overexpression of AURKA in MCF‐10A cancer cell line, and the change of transcriptome have been evaluated (RNA‐seq analysis). The outcomes of this study indicated that increasing AURKA level was associated with the increase in the expression level of genes involved in the cell cycle (Figure 3D). These data recommended that AURKA plays a vital role in the growth and division of cancer cells. The mutation data for all 13 common cancers indicated that the AURKA gene had a variety of mutations in various cancer samples, and the percentage of SNP mutations was more than other types (Figure 3E). Examination of mutations showed that most of the SNPs in this gene were new, and none of which was more abundant. These results also indicated that AURKA might play a role in cancer cells, cell proliferation, and mutation in cancer.

FIGURE 3.

FIGURE 3

AURKA is involved in the cell cycle and tp53 signal pathway. (A) The co‐expression network is shown for all genes that have significant correlation with AURKA. (B) The enrichment results shown for all genes in co‐expression network. ClueGo application in Cytoscape was used for enrichment based on Reactome database. (C) CCNB1 expression is shown in CRC and GC samples compared to normal adjacent samples. Also, the co‐expression between AURKA and CCNB1 levels in CRC and GC samples is indicated. (D) The enrichment results of genes affected by changes in AURKA expression are shown in GSE57931. (E) The frequency and different types of AURKA gene mutations are shown for all 13 common cancers based on TCGA data

3.3. The expression level of AURKA as a prognostic biomarker in some cancer types

The expression matrix of each cancer and the clinical information of each patient were utilized to analyze the relation between the level of AURKA and prognosis in prevalent cancers. The cox regression test outcomes (Table 3) indicated that increased expression of AURKA gene was associated with a poor prognosis in the bladder (BLCA), kidney (KIRC), liver (LIHC), lung (LUAD), prostate (PAAD), and uterine cancer (UCEC). Kaplan–Meier analysis was used to confirm the results of Table 3, in these cancers, it also showed that the increased levels of the AURKA gene expression were associated with a poor prognosis in these cancers (Figure 4). These data proposed that the AURKA gene could be an excellent prognostic biomarker in a number of cancers.

TABLE 3.

The cox regression test results between AURKA expression and patient survival

Cancer name Beta Hazard ratio (HR) Log‐rank HR lower––HR upper
Bladder urothelial carcinoma (BLCA) 0.30 1.36 0.018 1.12–1.76
Kidney renal clear cell carcinoma (KIRC) 0.57 1.76 0.000001 1.51–2.07
Liver hepatocellular carcinoma (LIHC) 0.34 1.41 0.008 1.1–1.82
Lung adenocarcinoma (LUAD) 0.32 1.38 0.001 1.13–1.7
Pancreatic adenocarcinoma (PAAD) 0.44 1.56 0.0007 1.21–2.02
Uterine corpus endometrial carcinoma (UCEC) 0.47 1.6 0.001 1.19–2.15

FIGURE 4.

FIGURE 4

Increased AURKA expression is associated with poor survival in some cancers. The Kaplan–Meier for the effect of AURKA expression on the survival of patients with various cancers is shown based on clinical TCGA data. The scale data (z‐score) for each patient were used for analysis, and patients whose AURKA gene expression was one unit higher than the mean were considered as a high expression group

3.4. Association of AURKA expression level with drug resistance and sensitivity based on in silico study

In order to obtain a proper assessment, the role of AURKA expression in drug resistance and sensitivity, GDSC and CCLE data were used (Section 2). Our results indicated that, the high level of AURKA has a correlation with increasing drug resistance to SB 505124, NU‐7441, and irinotecan drugs (Table 4). On the other hand, increasing the expression of AURKA can lead to sensitivity to dabrafenib and nutlin drugs (Table 4). To make sure of these results and visualizing, expression data and IC50 levels of all available drugs for all cell lines were extracted from GDSC and CCLE databases. Then Pearson correlation test was utilized between the AURKA expression level and IC50 of the mentioned drugs. Interestingly, previous results were also confirmed using this method as shown in Figure 5A–E (p < 0.01). The transcription level of AURKA can participate in resistance and sensitivity to some common chemotherapy drugs.

TABLE 4.

Results of resistance and sensitivity in relation to AURKA expression based on PharmacoDB package analysis

Source Drug name Estimate Degrees of freedom FDR
GDSC SB 505124 0.38 32 0.02
NU‐7441 0.57 28 0.0008
Dabrafenib −0.18 487 0.0004
Nutlin −0.19 493 0.0003
CCLE Irinotecan 0.17 286 0.01

FIGURE 5.

FIGURE 5

The AURKA level can play a role in drug resistance and sensitivity. The correlation test between AURKA expression and IC50 level for each drug in different cancer cell lines is shown. Data were extracted based on CCLE and GDSC databases

3.5. Reduction of AURKA expression in presence of JQ1, Actinomycin D, and Camptothecin in some types of cell cancers with a poor prognosis for this gene

The data in the GEO database were used to assess drug effects on AURKA level and lead to AURKA downregulation. This analysis showed that JQ1, actinomycin D, and camptothecin had the greatest effect on the decreasing expression in the liver, lung, and uterine cancer cell lines, respectively (Figure 6A–C, p < 0.001). Lapatinib also had a marked influence on reducing the AURKA expression in the breast cancer cell line compared to other drugs (Figure 6D–G, p < 0.001). Also, the results of other drugs on different cell lines were shown (Figure 6H and I, p < 0.001). Moreover, all genes that showed altered expression in the presence of drugs were summarized in Table S1, briefly. Our findings mentioned that these drugs could be good candidates to lower the expression level of the AURKA gene in various cancer samples.

FIGURE 6.

FIGURE 6

Some common chemotherapy drugs can directly or indirectly reduce AURKA expression. Using the information in the GEO, drugs that can reduce the level of AURKA are shown. All data are in logarithmic scale (****p < 0.0001, ***p < 0.001)

4. DISCUSSION

One of the most important elements in cancer studies is changing the level of genes expression in many types of cancers. Having a crucial role in the normal cells, some key genes altered by many items like a mutation that helps cancer cells growth. As some studies have shown that the expression level of the AURKA gene increased in many cancer cells including stomach, liver, colorectal, ovarian, breast, lung, bladder, head and neck, and prostate cancers.32, 33 In fact, what was achieved from our result was that the expression level of AURKA could be upregulated in stomach, colorectal, liver, ovarian, bladder, prostate, head and neck, lung, kidney, and lung cancers. Our data suggested that the high expression level of AURKA in all types of kidney cancers might be considered as a carcinogenesis factor that could inhibit apoptosis function. Therefore, the AURKA gene contributes in mitotic spindle formation, aneuploidy, and malignant transformation the high level of which could be strongly associated with carcinogenesis and cancer development.1, 34, 35

Based on a previous study, the high level of AURKA has been associated with clinical information such as tumor stage, lymph node, but not with gender, age, and race.36 Therefore, the aberrant level of AURKA could be mediating the molecular mechanisms underlying tumorigenesis.33, 36 AURKA might operate as an oncogene during the tumor progression by activating centrosome amplification and genomic instability.7, 37 Having a role in cell cycle, AURKA polymorphisms have a significant effect on cancers.33, 38 Although many AURKA polymorphisms were reported in previous studies, just some of which might indicate profound relation between these mutations and cancers.38, 39 Meanwhile, other recent studies showed that AURKA gene polymorphisms have a complete connection with increasing the risk of some cancers like liver and breast.40 For instance, previous studies showed that Polymorphism rs1047972 in the AURKA gene raises the level of liver cancer risk in spite of not having significant relation with bladder cancer risk.24, 38, 41 Besides, our bioinformatics data showed that most mutations in this gene are categorized as SNPs that are likely to be new. In conclusion, our pan‐cancer outcomes suggested that some new unknown mutations in AURKA could be discovered in many types of cancers.

AURKA gene has an important role in G2/M phase of cell division, and p53 is a key gene in suppressing tumors.42 In normal cells, AURKA’s function is to switch p53 off by phosphorylating Ser215 and Ser315,42 and it can inactivate p73 pro‐apoptotic functions.43, 44 Although deactivating tumor suppressors is a part of usual AURKA duties, it could raise cancer cells by permitting them to evade apoptosis.42, 43 AURKA overexpression might participate in progressing cancers by blocking DNA damage repair.45 As a result, this could be considered as an inverse connection between the high abnormal level of the AURKA gene and the low level of tumor suppressor proteins such as p53 and p71 that in this case, both of which are no longer able to induce apoptosis. In addition, our results indicated that the expression level of AURKA has correlation with the increasing expression level of genes that function in cell cycle. In doing so, based on our outcomes and other studies data, the AURKA gene probably has an effect on progressing and developing a cancer cell.

Furthermore, recent reports have mentioned that AURKA might have the potential to be considered as a therapeutic target in many types of cancers.46, 47 Some valuable AKIs have been identified for cancer therapy both in vitro and in vivo.23, 48 For instance, MLN8237 has been indicated that it could inhibit cell proliferation by damaging mitosis.49, 50 In fact, it makes autophagy and cell cycle arrest active and induce cell apoptosis.50 The high expression of AURKA could activate oncogenic factors such as c‐MYC, NF‐kB, and β‐catenin.15 In normal cells, c‐Myc expression can induce apoptosis indirectly, and on the contrary, the high level of c‐Myc in aberrant cells like uterine cancer could inhibit apoptosis and develop cancer cells.51, 52, 53 Recent studies indicated that some types of c‐Myc inhibitors like JQ1 could succeed in stopping cell proliferation in some types of cancers such as lung and uterine.54, 55 Therefore, the c‐Myc inhibitors could reduce the level of AURKA in cancers, and c‐Myc might be considered as a therapeutic target.56, 57 Based on our bioinformatics data, JQ1, actinomycin D1, camptothecin drugs decreased the expression level of AURKA in some kinds of cancers. Furthermore, lapatinib was able to lower the level of AURKA in breast cancer. Eventually, our outcomes showed that some drugs might be able to lower the level of AURKA in various cancers.

In addition to what has been mentioned about the expression level of AURKA whose overexpression could raise drug resistance and has a correlation with poor prognosis.58 In fact, our results showed that the high level of AURKA might have an influence on the overall survival of many types of cancer patients like breast, kidney, liver, lung, prostate, and uterine.59, 60 As some studies mentioned the overexpression of this gene has an inverse correlation with survival such as lung and bladder cancers.36 Recent studies showed that, the level of AURKA could be an independent prognostic factor for some types of cancers.61 Previous studies indicated that the high level of this gene was vital for tumorigenic capacity and drug resistance in some cancers like breast, lung, and stomach, the way our data showed the connection between the level of AURKA and drug resistance.42, 62 Our results indicated that the high level of AURKA has a correlation with increasing resistance to SB 505124, NU‐7441, irinotecan drugs, and meanwhile, this high expression has been associated with sensitivity to dabrafenib and nutlin. In doing so, these outcomes suggest that the relation between these drug resistance or sensitivity and the level of AURKA could be considered as an effective item to improve chemotherapy. Of course, this suggestion requires laboratory approval using cancer cell lines (high AURKA level vs low AURKA level) under commercial available molecules treatment.

5. CONCLUSION

Since the AURKA participates in the cell cycle and some signaling pathways in normal cells, the aberrant level of this gene can play an important role in many types of cancers. The abnormal expression level of AURKA correlates with some factors which could develop cancer cells. Although the high level of AURKA could be approved as a biomarker, it might make cancer patients show poor survival.

CONFLICT OF INTEREST

All authors have declared that no competing interests exist.

AUTHOR CONTRIBUTIONS

The design, sample collection, and conceptualization of study and methodology were performed by N.M. and K.G. Data mining, formal analysis, and investigation were performed by N.M. Supervision, validation, and visualization were performed by M.P. and K.G. Interpretation of the obtained information was performed by M.P. The manuscript was written by N.M. Review, editing, and approval of the manuscript were performed by M.P., K.G, and M.S. All authors read and approved the final manuscript.

Supporting information

Figure S1

Table S1

ACKNOWLEDGMENTS

The authors thank the Cancer Control Research Center for economic assistance. The authors also thank Mr. Mohammad Mahdevar for his association in RNA‐seq and microarray analysis. Also, the authors thank our colleagues for their helpful discussions in this study. Research reported in this publication was supported by National Cancer Control Charity Foundation under award number [CCF‐97028] Tehran, Iran to Kamran Ghaedi.

Miralaei N, Majd A, Ghaedi K, Peymani M, Safaei M. Integrated pan‐cancer of AURKA expression and drug sensitivity analysis reveals increased expression of AURKA is responsible for drug resistance. Cancer Med. 2021;10:6428–6441. 10.1002/cam4.4161

Funding information

Research reported in this publication was supported by Grant Committee under award number [CCF‐97028] from the Cancer Control Research Center/National Cancer Control Charitable Foundation, Tehran, Iran to KG.

Contributor Information

Ahmad Majd, Email: a_majd@iau-tnb.ac.ir, Email: ahmad_majd2005@yahoo.com.

Kamran Ghaedi, Email: kamranghaedi@sci.ui.ac.ir.

REFERENCES

  • 1.Chen C, Song G, Xiang J, Zhang H, Zhao S, Zhan Y. AURKA promotes cancer metastasis by regulating epithelial‐mesenchymal transition and cancer stem cell properties in hepatocellular carcinoma. Biochem Biophys Res Commun. 2017;486(2):514‐520. [DOI] [PubMed] [Google Scholar]
  • 2.Siegel RL, Miller KD, Goding Sauer A, et al. Colorectal cancer statistics, 2020. CA A Cancer J Clin. 2020;70(3):145‐164 [DOI] [PubMed] [Google Scholar]
  • 3.Sung H, Ferlay J, Siegel RL, et al. Global cancer statistics 2020: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. 2021;71(3):209‐249. [DOI] [PubMed] [Google Scholar]
  • 4.Jung E, Osswald M, Ratliff M, et al. Tumor cell plasticity, heterogeneity, and resistance in crucial microenvironmental niches in glioma. Nat Commun. 2021;12(1):1‐16. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 5.Cui H, Shan H, Miao MZ, et al. Identification of the key genes and pathways involved in the tumorigenesis and prognosis of kidney renal clear cell carcinoma. Sci Rep. 2020;10(1):1‐10. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Dong P, Yu B, Pan L, Tian X, Liu F. Identification of key genes and pathways in triple‐negative breast cancer by integrated bioinformatics analysis. BioMed Res Int. 2018;2018:1‐10. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.Goldenson B, Crispino JD. The aurora kinases in cell cycle and leukemia. Oncogene. 2015;34(5):537‐545. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Gomaa A, Peng D, Chen Z, et al. Epigenetic regulation of AURKA by miR‐4715‐3p in upper gastrointestinal cancers. Sci Rep. 2019;9(1):1‐11. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Otto T, Sicinski P. Cell cycle proteins as promising targets in cancer therapy. Nat Rev Cancer. 2017;17(2):93. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Zheng F, Yue C, Li G, et al. Nuclear AURKA acquires kinase‐independent transactivating function to enhance breast cancer stem cell phenotype. Nat Commun. 2016;7(1):1‐17. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Dauch D, Rudalska R, Cossa G, et al. A MYC–aurora kinase A protein complex represents an actionable drug target in p53‐altered liver cancer. Nat Med. 2016;22(7):744‐753. [DOI] [PubMed] [Google Scholar]
  • 12.Fanale D, Bazan V, Corsini LR, et al. HIF‐1 is involved in the negative regulation of AURKA expression in breast cancer cell lines under hypoxic conditions. Breast Cancer Res Treat. 2013;140(3):505‐517. [DOI] [PubMed] [Google Scholar]
  • 13.Huang C‐H, Chen C‐J, Chen P‐N, et al. Impacts of AURKA genetic polymorphism on urothelial cell carcinoma development. J Cancer. 2019;10(6):1370. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14.Katsha A, Wang L, Arras J, et al. Activation of EIF4E by Aurora kinase A depicts a novel druggable axis in everolimus‐resistant cancer cells. Clin Cancer Res. 2017;23(14):3756‐3768. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Wang L, Arras J, Katsha A, et al. Cisplatin‐resistant cancer cells are sensitive to Aurora kinase A inhibition by alisertib. Mol Oncol. 2017;11(8):981‐995. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 16.Liu Q, Kaneko S, Yang L, et al. Aurora‐A abrogation of p53 DNA binding and transactivation activity by phosphorylation of serine 215. J Biol Chem. 2004;279(50):52175‐52182. [DOI] [PubMed] [Google Scholar]
  • 17.Liu X, Zhang Y, Wu S, et al. Palmatine induces G2/M phase arrest and mitochondrial‐associated pathway apoptosis in colon cancer cells by targeting AURKA. Biochem Pharmacol. 2020;175:113933. [DOI] [PubMed] [Google Scholar]
  • 18.Katayama H, Sasai K, Kawai H, et al. Phosphorylation by aurora kinase A induces Mdm2‐mediated destabilization and inhibition of p53. Nature Genet. 2004;36(1):55‐62. [DOI] [PubMed] [Google Scholar]
  • 19.Puig‐Butille JA, Vinyals A, Ferreres JR, et al. AURKA overexpression is driven by FOXM1 and MAPK/ERK activation in melanoma cells harboring BRAF or NRAS mutations: impact on melanoma prognosis and therapy. J Invest Dermatol. 2017;137(6):1297‐1310. [DOI] [PubMed] [Google Scholar]
  • 20.de Martino M, Shariat SF, Hofbauer SL, et al. Aurora A kinase as a diagnostic urinary marker for urothelial bladder cancer. World J Urol. 2015;33(1):105‐110. [DOI] [PubMed] [Google Scholar]
  • 21.Yang Y, Ding L, Zhou Q, et al. Silencing of AURKA augments the antitumor efficacy of the AURKA inhibitor MLN8237 on neuroblastoma cells. Cancer Cell Int. 2020;20(1):1‐16. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Wang‐Bishop L, Chen Z, Gomaa A, et al. Inhibition of AURKA reduces proliferation and survival of gastrointestinal cancer cells with activated KRAS by preventing activation of RPS6KB1. Gastroenterology. 2019;156(3):662–675.e7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 23.Du R, Huang C, Liu K, Li X, Dong Z. Targeting AURKA in cancer: molecular mechanisms and opportunities for cancer therapy. Mol Cancer. 2021;20(1):1‐27. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 24.Necchi A, Pintarelli G, Raggi D, Giannatempo P, Colombo F. Association of an aurora kinase A (AURKA) gene polymorphism with progression‐free survival in patients with advanced urothelial carcinoma treated with the selective aurora kinase A inhibitor alisertib. Invest New Drugs. 2017;35(4):524‐528. [DOI] [PubMed] [Google Scholar]
  • 25.Mobley A, Zhang S, Bondaruk J, et al. Aurora kinase A is a biomarker for bladder cancer detection and contributes to its aggressive behavior. Sci Rep. 2017;7(1):1‐13. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Colaprico A, Silva TC, Olsen C, et al. TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data. Nucleic Acids Res. 2016;44(8):e71. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Law CW, Chen Y, Shi W, Smyth GK. voom: precision weights unlock linear model analysis tools for RNA‐seq read counts. Genome Biol. 2014;15(2):1‐17. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 28.Cibulskis K, Lawrence MS, Carter SL, et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nature Biotechnol. 2013;31(3):213‐219. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 29.Mayakonda A, Lin D‐C, Assenov Y, Plass C, Koeffler HP. Maftools: efficient and comprehensive analysis of somatic variants in cancer. Genome Res. 2018;28(11):1747‐1756. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD. The sva package for removing batch effects and other unwanted variation in high‐throughput experiments. Bioinformatics. 2012;28(6):882‐883. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 31.Schmittgen TD, Livak KJ. Analyzing real‐time PCR data by the comparative CT method. Nat Protocols. 2008;3(6):1101. [DOI] [PubMed] [Google Scholar]
  • 32.Treekitkarnmongkol W, Katayama H, Kai K, et al. Aurora kinase‐A overexpression in mouse mammary epithelium induces mammary adenocarcinomas harboring genetic alterations shared with human breast cancer. Carcinogenesis. 2016;37(12):1180‐1189. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33.Chou C‐H, Chou Y‐E, Chuang C‐Y, Yang S‐F, Lin C‐W. Combined effect of genetic polymorphisms of AURKA and environmental factors on oral cancer development in Taiwan. PLoS ONE. 2017;12(2):e0171583. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 34.Goos JA, Coupé VM, Diosdado B, et al. Aurora kinase A (AURKA) expression in colorectal cancer liver metastasis is associated with poor prognosis. Brit J Cancer. 2013;109(9):2445‐2452. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35.Blanco I, Kuchenbaecker K, Cuadras D, et al. Assessing associations between the AURKA‐HMMR‐TPX2‐TUBG1 functional module and breast cancer risk in BRCA1/2 mutation carriers. PLoS ONE. 2015;10(4):e0120020. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 36.Kamran M, Long Z, Xu D, et al. Aurora kinase A regulates Survivin stability through targeting FBXL7 in gastric cancer drug resistance and prognosis. Oncogenesis. 2017;6(2):e298. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 37.Chuang T‐P, Wang J‐Y, Jao S‐W, et al. Over‐expression of AURKA, SKA3 and DSN1 contributes to colorectal adenoma to carcinoma progression. Oncotarget. 2016;7(29):45803. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 38.Dai Z‐J, Kang H‐F, Wang X‐J, et al. Association between genetic polymorphisms in AURKA (rs2273535 and rs1047972) and breast cancer risk: a meta‐analysis involving 37,221 subjects. Cancer Cell Int. 2014;14(1):1‐8. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 39.Lee C‐P, Chiang S‐L, Lee C‐H, et al. AURKA Phe31Ile polymorphism interacted with use of alcohol, betel quid, and cigarettes at multiplicative risk of oral cancer occurrence. Clin Oral Invest. 2015;19(8):1825‐1832. [DOI] [PubMed] [Google Scholar]
  • 40.Wang B, Hsu C‐J, Chou C‐H, et al. Variations in the AURKA gene: biomarkers for the development and progression of hepatocellular carcinoma. Int J Med Sci. 2018;15(2):170. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 41.Mesic A, Rogar M, Hudler P, Juvan R, Komel R. Association of the AURKA and AURKC gene polymorphisms with an increased risk of gastric cancer. IUBMB Life. 2016;68(8):634‐644. [DOI] [PubMed] [Google Scholar]
  • 42.Sehdev V, Katsha A, Arras J, et al. HDM2 regulation by AURKA promotes cell survival in gastric cancer. Clin Cancer Res. 2014;20(1):76‐86. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 43.Vilgelm AE, Pawlikowski JS, Liu Y, et al. Mdm2 and aurora kinase a inhibitors synergize to block melanoma growth by driving apoptosis and immune clearance of tumor cells. Cancer Res. 2015;75(1):181‐193. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 44.Hsueh K‐W, Fu S‐L, Chang C‐B, Chang Y‐L, Lin C‐H. A novel Aurora‐A‐mediated phosphorylation of p53 inhibits its interaction with MDM2. Biochim Biophys Acta Proteins Proteom. 2013;1834(2):508‐515. [DOI] [PubMed] [Google Scholar]
  • 45.Katayama H, Wang J, Treekitkarnmongkol W, et al. Aurora kinase‐A inactivates DNA damage‐induced apoptosis and spindle assembly checkpoint response functions of p73. Cancer Cell. 2012;21(2):196‐211. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 46.Umene K, Yanokura M, Banno K, et al. Aurora kinase A has a significant role as a therapeutic target and clinical biomarker in endometrial cancer. Int J Oncol. 2015;46(4):1498‐1506. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 47.Guo M, Lu S, Huang H, et al. Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer. BMC Syst Biol. 2018;12(7):11‐17. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 48.Caputo E, Miceli R, Motti ML, et al. AurkA inhibitors enhance the effects of B‐RAF and MEK inhibitors in melanoma treatment. J Transl Med. 2014;12(1):1‐9. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 49.Dees EC, Infante JR, Cohen RB, et al. Phase 1 study of MLN8054, a selective inhibitor of Aurora A kinase in patients with advanced solid tumors. Cancer Chemother Pharmacol. 2011;67(4):945‐954. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 50.Liu Y, Hawkins OE, Su Y, et al. Targeting aurora kinases limits tumour growth through DNA damage‐mediated senescence and blockade of NF‐κB impairs this drug‐induced senescence. EMBO Mol Med. 2013;5(1):149‐166. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 51.Soucek L, Evan GI. The ups and downs of Myc biology. Curr Opin Genet Dev. 2010;20(1):91‐95. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 52.Nair R, Roden D, Teo W, et al. c‐Myc and Her2 cooperate to drive a stem‐like phenotype with poor prognosis in breast cancer. Oncogene. 2014;33(30):3992‐4002. [DOI] [PubMed] [Google Scholar]
  • 53.Zhao Z‐N, Bai J‐X, Zhou Q, et al. TSA suppresses miR‐106b‐93‐25 cluster expression through downregulation of MYC and inhibits proliferation and induces apoptosis in human EMC. PLoS ONE. 2012;7(9):e45133. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 54.Albihn A, Johnsen JI, Henriksson MA. MYC in oncogenesis and as a target for cancer therapies. Adv Cancer Res. 2010;107:163‐224. [DOI] [PubMed] [Google Scholar]
  • 55.Fletcher S, Prochownik EV. Small‐molecule inhibitors of the Myc oncoprotein. BBA‐Gene Regul Mech. 2015;1849(5):525‐543. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 56.Filippakopoulos P, Qi J, Picaud S, et al. Selective inhibition of BET bromodomains. Nature. 2010;468(7327):1067‐1073. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 57.Qiu H, Li J, Clark LH, et al. JQ1 suppresses tumor growth via PTEN/PI3K/AKT pathway in endometrial cancer. Oncotarget. 2016;7(41):66809. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 58.Komoto TT, Bernardes TM, Mesquita TB, et al. Chalcones repressed the AURKA and MDR proteins involved in metastasis and multiple drug resistance in breast cancer cell lines. Molecules. 2018;23(8):2018. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 59.Galusic D, Lucijanic M, Livun A, et al. Higher AURKA and PLK1 expression are associated with inferior overall survival in patients with myelofibrosis. Blood Cells Mol Dis. 2020;81:102396. [DOI] [PubMed] [Google Scholar]
  • 60.Lee JW, Parameswaran J, Sandoval‐Schaefer T, et al. Combined aurora kinase A (AURKA) and WEE1 inhibition demonstrates synergistic antitumor effect in squamous cell carcinoma of the head and neck. Clin Cancer Res. 2019;25(11):3430‐3442. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 61.Al‐Khafaji AS, Marcus MW, Davies M, et al. AURKA mRNA expression is an independent predictor of poor prognosis in patients with non‐small cell lung cancer. Oncol Lett. 2017;13(6):4463‐4468. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 62.Zhang Y, Chen H‐X, Zhou S‐Y, et al. Sp1 and c‐Myc modulate drug resistance of leukemia stem cells by regulating survivin expression through the ERK‐MSK MAPK signaling pathway. Mol Cancer. 2015;14(1):1‐18. [DOI] [PMC free article] [PubMed] [Google Scholar]

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Table S1


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