|
Bacterial and virus
strains
|
| AAV1.Syn.GCaMP6f.WPRE.SV40 |
Penn Vector Core |
N/A |
| ROSA26-CAG-stopflox-tdTomato Ai9 |
JAX |
007909 |
|
Chemicals, peptides, and
recombinant proteins
|
| Pentylenetetrazol (PTZ) |
Sigma-Aldrich |
PubChem ID: 24278643 |
| Kainic Acid (KA) |
Sigma-Aldrich |
PubChem ID: 24277985 |
|
Deposited data
|
| Functional calcium imaging data |
This paper |
http://dx.doi.org/10.17632/9936ryd5h7.2
|
| Effective connectivity models |
This paper |
http://dx.doi.org/10.17632/dghdz45rfd.2
|
|
Experimental models:
organisms/strains
|
| Zebrafish
Tg(elavl3:H2B-GCaMP6s)
|
(Vladimirov
et al., 2014) |
jf5 |
| Mouse Nestrin-CreERT2
|
JAX |
016261 |
|
Software and
algorithms
|
| Python |
Python.org
|
v3.6 |
| SNAP |
http://snap.stanford.edu/
|
v6 |
| networkx |
https://networkx.org/
|
v2.5 |
| scipy |
https://www.scipy.org/
|
v1.20 |
| leidenalg |
(Traag,
2021) |
v0.8.40 |
| igraph |
(Nepusz,
2021) |
v0.9.4 |
| FIJI/ImageJ |
NIH |
v1.52p |
| CaImAn |
(Giovannucci
et al., 2019) |
PMID: 30652683 |
| Computational Morphometry Toolkit
(CMTK) |
NITRC |
v3.3 |
| FORCE |
(Sussillo
and Abbott, 2009) |
PMID: 19709635 |
| MAPPR |
(Yin et al.,
2017) |
PMID: 28344853 |
