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. 2021 Aug 25;40(9):S79–S90. doi: 10.1097/INF.0000000000002648

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Copyright © 2021 The Author(s). Published by Wolters Kluwer Health, Inc.

This is an open-access article distributed under the terms of the Creative Commons Attribution License 4.0 (CCBY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The work cannot be changed in any way or used commercially without permission from the journal.

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FIGURE 3. — Integrated etiology results for HIV-uninfected/CXR-positive cases. Other Strep includes Streptococcus pyogenes and Enterococcus faecium. NFGNR includes Acinetobacter species and Pseudomonas species. Enterobacteriaceae includes Escherichia coli, Enterobacter species and Klebsiella species, excluding mixed Gram-negative rods. CXR+ defined as consolidation and/or other infiltrate on chest radiograph. Bacterial summary excludes Mtb. Analysis adjusted for age and site. Pathogens estimated at the subspecies level but grouped to the species level for display (Parainfluenza virus type 1, 2, 3 and 4; S. pneumoniae PCV 13 and S. pneumoniae non-PCV 13 types; H. influenzae type b and H. influenzae non-b; influenza A, B and C). Exact figures and subspecies and serotype disaggregation (eg, PCV-13 type and non-PCV-13 type) are given in Supplemental Digital Content 7, http://links.lww.com/INF/D815. Line represents the 95% credible interval. The size of the symbol is scaled based on the ratio of the estimated etiologic fraction to its standard error. Of 2 identical etiologic fraction estimates, the estimate associated with a larger symbol is more informed by the data than the priors. Adeno indicates Adenovirus; B. pert, Bordetella pertussis; Boca, Human bocavirus; C. pneu, Chlamydophila pneumoniae; Cand sp, Candida species; CMV, cytomegalovirus; Entrb, Enterobacteriaceae; Flu, influenza virus A, B and C; H. inf, Haemophilus influenzae; HCoV, Coronavirus; HMPV, Human metapneumovirus A/B; Legio, Legionella species; M. cat, Moraxella catarrhalis; M. pneu, Mycoplasma pneumoniae; Mtb, Mycobacterium tuberculosis; NFGNR, nonfermentative gram-negative rods; N. men, Neisseria meningitidis; NoS, Not Otherwise Specified (ie, pathogens not tested for); P. jirov, P. jirovecii; Para, parainfluenza virus types 1, 2, 3 and 4; PV/EV, parechovirus/enterovirus; Rhino, human rhinovirus; RSV, respiratory syncytial virus A/B; S. aur, Staphylococcus aureus; S. pneu, Streptococcus pneumoniae; Salm sp, Salmonella species.