REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Biological samples | ||
Human blood | SJTU BIO-X psychiatric sample bank | http://www.bio-x.cn/ |
Deposited data | ||
Raw data of Target sequencing | This paper | Mendeley Data, V2, https://doi.org/10.17632/6w5zmn6j8h.2. |
mRNA sequencing analyzed data | This paper | Mendeley Data, V1, https://doi.org/10.17632/hy3bh2z8x8.1 |
Experimental models: Organisms/strains | ||
D. melanogaster: elav-GAL4 | Bloomington Drosophila Stock Center | flybase_FBst0000458 |
D. melanogaster: Mz19-GAL4 | Bloomington Drosophila Stock Center | flybase_FBal0155865 |
D. melanogaster: Mz699-GAL4 | Bloomington Drosophila Stock Center | flybase_FBal0066073 |
D. melanogaster: UAS-Ten-m | Bloomington Drosophila Stock Center | flybase_FBst0041569 |
D. melanogaster: UAS-Ten-m-RNAi | Bloomington Drosophila Stock Center | flybase_FBtp0052660 |
D. melanogaster: w;Cyo/sco;MKRS/Tb | Kyoto Stock Center | flybase_FBst0305835 |
D. melanogaster: LN1-GAL4 | Kyoto Stock Center | flybase_FBst0302813 |
Oligonucleotides | ||
Primers for TENM4, see supplemental information Such as: GACCCTGTTTGT GGATGTGGA |
This paper | N/A |
Software and algorithms | ||
Burrows-Wheeler Aligner (BWA) | Li and Durbin, 2009 | http://bio-bwa.sourceforge.net/ |
Samtools | Li et al. (2009) | http://samtools.sourceforge.net/ |
Genome Analysis Toolkit (GATK) | McKenna et al. (2010) | http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit |
ANNOVAR | Wang et al. (2010) | https://annovar.openbioinformatics.org/en/latest/ |
IGV | Robinson et al. (2011) | http://www.igv.org/ |
Trimmomatic | Bolger et al. (2014) | http://www.usadellab.org/cms/index.php?page=trimmomatic |
TopHat2 | Kim et al. (2013) | http://ccb.jhu.edu/software/tophat/manual.shtml |
Cufflinks | Trapnell et al. (2012) | http://cole-trapnell-lab.github.io/cufflinks/ |
Bowtie2 | Langmead and Salzberg (2012) | http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
HTSeq | Anders et al. (2015) | https://htseq.readthedocs.io/en/master/ |
DESeq2 | Love et al. (2014) | http://bioconductor.org/packages/release/bioc/html/DESeq2.html |