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. 2021 Sep 2;24(9):103074. doi: 10.1016/j.isci.2021.103074
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-ERK1 + ERK2 antibody Abcam Cat# ab17942
anti-β-actin Santa Cruz Biotechnology Cat# I-19
anti-RIPK1 BD-Biosciences Cat# 610459
anti-β-tubulin Abcam Cat# ab6046
anti-β-tubulin-HRP Abcam Cat# ab21058
Anti-MAP Kinase, Activated (Diphosphorylated ERK-1&2) antibody Sigma Aldrich Clone MAPK-YT, M9692
anti-MLKL Merck Millipore Cat# MABC604, Clone 3H1
Anti-phospho-MLKL (Ser345) Merck Millipore Cat# MABC1158, clone 7C6.1
Phospho-MEK1/2 (Ser217/221) Cell Signalling Cat# 9121
Anti-MEK1/2 Cell Signalling Cat# 9122
anti-RIPK3 Santa Cruz Cat# sc-374639
anti-RSK1/2/3 Cell Signalling Cat# 9355, clone 32D7
anti-phspho-p90-RSK (Ser380) Cell Signalling Cat# 9341
anti-GSK3β Cell Signalling Cat# 12456, clone D5C5Z-XP
anti-phospho-GSK-3α/β Cell Signalling Cat# 9331
anti-mouse Alexa Fluor 488 Thermo Fischer Cat# A-10667
HRP-conjugated anti-rabbit IgG Santa Cruz Biotechnology Cat# sc-2004
HRP-conjugated anti-mouse IgG Santa Cruz Biotechnology Cat# sc-2005
HRP-conjugated anti-goat IgG Santa Cruz Biotechnology Cat# sc-2020
HRP-conjugated anti-rat- IgG GE Healthcare Cat# NA935

Chemicals, peptides, and recombinant proteins

Recombinant mouse TNFα In house production N/A
Anti-hFas ligand Upstate Cat# 05-201Clone CH11
Phorbol 12-myristate 13-acetate (PMA) Sigma Aldrich Cat# P8139
U0126 Sigma Aldrich Cat# U120
PD184352 Sigma Aldrich Cat# PZ0181
AZ628 Sigma Aldrich Cat# SML0785
BI-D1878 Sigma Aldrich Cat# 559286
Forskoline Tocris Cat# 1099/10
SCH772984 Selleckchem Cat# S7101
Selumetinib (AZD6244) Selleckchem Cat# S1008
Trametinib (GSK1120212) Selleckchem Cat# S2673
Necrostatin-1S (Nec1S) Laboratory of Medicinal Chemistry; University of Antwerp Cat# UAMC-02197
Propidium Iodide Sigma Aldrich Cat# P-4170
Sytox Green Thermo Fischer Scientific Cat# S7020
Doxycycline Hyclate (Dox) Sigma Aldrich Cat# D9891
Rneasy Mini Kit Qiagen Cat# 74104
Qiashredder Qiagen Cat# 79654
DNA-free™ DNA Removal Kit Invitrogen Cat# AM1906
SuperScript® III First-Strand Synthesis System for RT-PCR Invitrogen Cat# 18080-51
qPCR MasterMix Plus for SYBR® Green I No ROX Eurogentec Cat# RT-SN2X-03+NR
Ac-DEVD-AMC Pepta Nova Cat# 3171-V
Bio-Gel P-6 Micro Bio-Spin chromatography columns Biorad Cat# 732-6222
plasmid purification columns Qiagen Cat# 28106, 28706, and 27106
PCR colony screening kit 5Prime Cat# MasterTaq Kit
Q5 DNA polymerase NEB Cat# M0491
Taq DNA polymerase NEB Cat# M0273
Klenow fragment NEB Cat# M0212
T4 Polynucleotide Kinase (PNK) NEB Cat# M0201
T4 DNA ligase NEB Cat# M0202
dNTPs NEB Cat# N0447
ATP NEB Cat# P0756
Restriction Enzymes, endonucleases NEB N/A
four-fragment Multisite Gateway Pro Plus system Life Technologies Cat# 12537-100
EDTA-free Complete protease inhibitor cocktail tablets Roche Diagnostics Belgium Cat# 11873580001
phosphatase inhibitor cocktail tablets Roche Diagnostics Belgium Cat# 04906837001, PhosSTOP
Luminata Classico Western HRP Chemiluminescence Detection Reagents Millipore Cat# WBLUC0500

Experimental models: Cell lines

HeLa ECACC Cat# 93021013
HEK 293T ATCC Cat# CRL-11268
L929sAhFas Generated in our unit N/A
HT-29 ATCC Cat# ATCC-HTB-38
inducible mRIPK3-CT26 Generated in our unit Aaes et al. (2016)
Fadd-/-Jurkat Generated in our unit N/A
Mlkl-/- L929sAhFas Generated in our unit N/A
inducible mMLKL(S345D)-L929sAhFas Generated in our unit N/A

Recombinant DNA

AKAR4.0 This study N/A
EKAR4.0 This study N/A
AKAR3-EV Kindly provided by the Michiyuki Matsuda laboratory (Laboratory of Bioimaging and Cell Signaling, Graduate School of Biostudies, Kyoto University, Kyoto, Japan) Komatsu, N., Aoki, K., Yamada, M., Yukinaga, H., Fujita, Y., Kamioka, Y., and Matsuda, M. (2011). Development of an optimized backbone of FRET biosensors for kinases and GTPases. Mol. Biol. Cell 22, 4647–4656.
AKAR-EV (T>A) This study N/A
EKAR-EV Kindly provided by the Michiyuki Matsuda laboratory (Laboratory of Bioimaging and Cell Signaling, Graduate School of Biostudies, Kyoto University, Kyoto, Japan) Komatsu, N., Aoki, K., Yamada, M., Yukinaga, H., Fujita, Y., Kamioka, Y., and Matsuda, M. (2011). Development of an optimized backbone of FRET biosensors for kinases and GTPases. Mol. Biol. Cell 22, 4647–4656.
EKAR-EV (T>A) This study N/A
EKAR2G-WT A gift from Olivier Pertz Addgene plasmid # 39813 ; http://n2t.net/addgene:39813 ; RRID:Addgene_39813
EKAR2G-105/WT A gift from Olivier Pertz Addgene plasmid # 39818 ; http://n2t.net/addgene:39818 ; RRID:Addgene_39818
EKAR-EV-VV Previously developed Vandame, P., Spriet, C., Riquet, F., Trinel, D., Cailliau-Maggio, K., and Bodart, J.-F. (2014). Optimization of ERK activity biosensors for both ratiometric and lifetime FRET measurements. Sensors (Basel). 14, 1140–1154.
pDG2-flag-rtTA3-puro-mRIPK3 Previously generated in our unit Aaes et al. (2016)
pDG2-flag-rtTA3-puro-mMLKL(S345D) Generated in our unit N/A

Software and algorithms

Statistical analyses GraphPad Prism PRISM 8 software, RRID: SCR_002798
qPCR analysis Biogazelle qBasePLUS, RRID: SCR_003370
FRET analysis (short experiment) IGOR Pro - Wavemetrics Ratioscope_8.31, DOI:10.25493/5G5V-HBC
FRET analysis (long experiment) Matlab, MathWorks CellTraFIC code, RRID: SCR_001622
CellTraFIC (Cellular Tracking in FRET Image aCquisition) APP Paris IDDN.FR.001.230009.000.S.P.
2017.000.21000
CellTraFIC (Cellular Tracking in FRET Image aCquisition) GitHub https://github.com/ayleray/CellTraFIC
Cell Death Analysis Fiji RRID: SCR_002285
Immunofluorescence quantification Cell Profiler RRID: SCR_007358