Figure 5.

Analysis of small RNA reads that map to viral integrations in the koala genome. Small RNA data sets were downloaded from NCBI SRA and mapped to EVEs in the koala genome identified in this study using HISAT2. (A) Distribution of mapped small RNA between genomic EVEs in the koala, grouped by tissue type. Viral family and genes are coloured and detailed in the key. (B) Orientation of small RNA mapped to EVE-derived transcripts in the koala. (C) Sequence logo of secondary piRNA-length molecules, showing 1ʹU bias and 10ʹA bias. Created using WebLogo 3 (Crooks et al. 2004).